Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4223 ATGCCCACCGATTCTCGACGCAAGCATCGCCGATCACCTTCTCCCGATGACCACGACAAATCCTCCAAACGTCACAAACACCGCCACCGTCACCGCCACCACATCAGCAAAAAACGCGGCGAAGAAGAGATTCAATTCGATGCTGAAACCGTTGATTCGGTGAAGATCAATCATCTTCCTGTTGATGACGTAGAGGAGGGAGAGATTCTTGATGACCTGCCTTTCGAGGTCAAAGATGATCCAGATCTTCGATCTAATGACAAAAATCCGGGACTTCCCGCTAAAAATTCAGAAACTGAACATGAGGACATCAGCAATGACAGATTTATTAATCATACTTCTGATGAAGAAGATGGGAAACTGCGTCAGAGCTGCCACATTGATACTCGAATTAATGACGATGATGATTCTCCATACAACTCAAGAGCTGAAACTCAAACTAGGAGGGATGTTCGAGCTGGTACTGATGCTCTGGGCAATGGGCATCTGGGTGTTAAGTCTTCCAAAGGGGATAAGTGGAAGAATTGGGAGTTTGGTCATTTTAGAGGAAATGAGAAACTTAAAGGTGACAATGATGACGACACACTGGAGGCTAATAGAAGGGAAGTAAATCCCCACAGGAATTCCTCTGAAAGTGGAGAAGAAAAACACAGAATGTCAGCGAATTCTCCTTTGCATGATGGACACAGAAGTCGATCAAGATCAATTGGTCATACAAGGGATAGGTCTCGTTCTCGTAGTGTAGTAGAAGAGCATGCTCGTCCCAAGAACAGGCACTCTGTGGAACAAGGATCCCTTTATTATACCAGTAGACACAAGACTGACTATGACCTTGATGAGGAAACAGTGAGAGCAGGAAGAAGGGAGCATCGTCACGGCAGTAAGGATCTGATGGAAGATGATAGACGAGAACACAGTTCTAGGTATCATAGTCGGGAGGCCCGGGATAAGAACAGGAACAAGGATATGGATAAGGATAGGGGTCGGGACAGAGATGTGGATAGAGACTTGCATAGGGAAAAGAAGCGAGAGGAAACAAGCAGGAATAAGGAGGTTGATTGGGTGCATAGAAGGGAAAAAGAACGTGGAAGGAGTCATGACAGGCATAGAAGGGACATGGTAAAAGATAGGAGCAGGGAAAGGGATGAGGGTAGGGATAGGAGAAGAGAAATGGAAAGAGATAGGAGCAGGGACGCAGTTTATGAGAGGGATAGTAGAAGGGAAACTGAAAGAGATATGAGCAGGGACAGAACAAGGGGTGGTGAGAGAGATAGAGACTGGAAGAGTGAATGGGATTATAGGAACCGGGAAAGGGATATCAATAAGGAGAGACGAGATGACAGATATCGGCACAACGATGAAGACACTCCTAATGGTAAGGATAAGCATATGCATCGCGAGGATGATAATGACATCGGAGATAGATATAAAAAACATTCAAGACATGAAGAAAATGGATACCATGCAGATAGAAAGAGAAACTATACCATGGAAGAGGATGGAAGGAAACTTAAAGGCAGCGAGGTTGAACAAGATGATGTAGATGAGGATACATTGGAATTACCTGATCAGGAAGAGGAAGATCTGATCAGAATCAAAGAGGAGAGTAGAAGAAGAAGAGAAGCAATAATGGAGAAATACAAGAAGCAGAGTCAGCAAATACAGCAAGCAGCTGAAAATGAAGGAAAAGACAAGGACATGGAGATTCACACTGACATTTCTAAAGCAATTGATGGCAAGAGTGATGATGTGGAACCATCATTTTCTGTTGGGAAATCTCCACCTGAAAATGTGGATGTTGGCTCAGAGAAGGTACCTGGTGCTGGTGGCCTAGGGGAGGGTACTCCAAAGAGTGAGAGGTCAGCTGACAAGTATTGTGATGATATATTTGGTGAGACACCAACTGGAGTTCGGAAATCGGGAAAGGAAGATGGGCTACTGATTGAGAGGGCCGGCCTGCATGACAATTGGGATGATGCAGAGGGCTATTACAGCTATCGTTTTGGTGAAATACTTGATGGCCGATATGAAGTTACTGCTGCACATGGGAAGGGTGTCTTTTCAACAGTTGTACGAGCTAGGAATCTAAAAGCTGGTAATGGTGAGCCAGATGAAGTAGCAATAAAAATTATCCGCAATAACGACACTATGTACAAGGCTGGTTTGGATGAATTGGTCATTTTGAAGAAATTAGTAGGTGCAGATCCGGATGATAAACGTCATTGTGTTCGTTTCCTTTCAAGCTTTAAGTACAGAAATCATCTATGTTTAGTTTTTGAATCTCTAAATATGAATCTGCGTGAGGTTTTAAAGAAGTTCGGTCGCAATATTGGCCTTAGGCTAACTGCTGTGAGGACATATGCAAAACAGCTTTTTATTGCACTGAAGCATCTCCGTAACTGTGGTGTTCTGCACTGTGATATAAAGCCTGATAATATGTTGGTGAACGAGGCTAAAAATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTGACACCATATCTTGTGAGTCGCTTTTATCGTGCTCCTGAAATAATTCTTGGCTTGCAGTATGATCATCCATTGGATATTTGGTCTGTAGGCTGTTGTTTGTATGAACTGTACACAGGGAAGGTTCTATTTCCAGGGCTCACAAACAATGACATGCTGCGGCTTCACATGGAATTGAAGGGCCCTTTTCCAAAAAAGATGCTCCGTAAGGGAGCGTTTACTGGACAGCATTATGACCAAGACTTAAGTTTTCATGCCACTGACGAGGATCCTGTAACAAAAAAGACCATAAAGCGGATGATTCTTAACATAAAGCCGAAAGATATTGGAACAATCGTTGCTGGCTCTTCTGGGGAAGACCCAAAAATGTTGGCCAATTTTAAAGATATTCTAGATAAAATTTTCGTCTTGGATCCGGACAAGCGGTTGACAGTCTCACAAGCATTGAACCACCCATTCATCACTGGCAAGTGA 2985 0.4338 MPTDSRRKHRRSPSPDDHDKSSKRHKHRHRHRHHISKKRGEEEIQFDAETVDSVKINHLPVDDVEEGEILDDLPFEVKDDPDLRSNDKNPGLPAKNSETEHEDISNDRFINHTSDEEDGKLRQSCHIDTRINDDDDSPYNSRAETQTRRDVRAGTDALGNGHLGVKSSKGDKWKNWEFGHFRGNEKLKGDNDDDTLEANRREVNPHRNSSESGEEKHRMSANSPLHDGHRSRSRSIGHTRDRSRSRSVVEEHARPKNRHSVEQGSLYYTSRHKTDYDLDEETVRAGRREHRHGSKDLMEDDRREHSSRYHSREARDKNRNKDMDKDRGRDRDVDRDLHREKKREETSRNKEVDWVHRREKERGRSHDRHRRDMVKDRSRERDEGRDRRREMERDRSRDAVYERDSRRETERDMSRDRTRGGERDRDWKSEWDYRNRERDINKERRDDRYRHNDEDTPNGKDKHMHREDDNDIGDRYKKHSRHEENGYHADRKRNYTMEEDGRKLKGSEVEQDDVDEDTLELPDQEEEDLIRIKEESRRRREAIMEKYKKQSQQIQQAAENEGKDKDMEIHTDISKAIDGKSDDVEPSFSVGKSPPENVDVGSEKVPGAGGLGEGTPKSERSADKYCDDIFGETPTGVRKSGKEDGLLIERAGLHDNWDDAEGYYSYRFGEILDGRYEVTAAHGKGVFSTVVRARNLKAGNGEPDEVAIKIIRNNDTMYKAGLDELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRTYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLQYDHPLDIWSVGCCLYELYTGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTGQHYDQDLSFHATDEDPVTKKTIKRMILNIKPKDIGTIVAGSSGEDPKMLANFKDILDKIFVLDPDKRLTVSQALNHPFITGK* 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4223 994 MobiDBLite consensus disorder prediction 1 426 - -
Mtr1g4223 994 SUPERFAMILY Protein kinase-like (PK-like) 663 993 IPR011009 -
Mtr1g4223 994 MobiDBLite consensus disorder prediction 559 582 - -
Mtr1g4223 994 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 359 994 - -
Mtr1g4223 994 Gene3D Transferase(Phosphotransferase) domain 1 736 992 - -
Mtr1g4223 994 SMART serkin_6 676 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g4223 994 ProSiteProfiles Protein kinase domain profile. 676 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g4223 994 MobiDBLite consensus disorder prediction 167 259 - -
Mtr1g4223 994 Pfam Protein kinase domain 678 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g4223 994 MobiDBLite consensus disorder prediction 525 547 - -
Mtr1g4223 994 Coils Coil 533 564 - -
Mtr1g4223 994 MobiDBLite consensus disorder prediction 442 622 - -
Mtr1g4223 994 CDD STKc_PRP4 675 991 IPR044092 GO:0004674|GO:0006468|GO:0045292
Mtr1g4223 994 MobiDBLite consensus disorder prediction 94 151 - -
Mtr1g4223 994 MobiDBLite consensus disorder prediction 442 510 - -
Mtr1g4223 994 Gene3D Phosphorylase Kinase; domain 1 646 735 - -
Mtr1g4223 994 MobiDBLite consensus disorder prediction 1 21 - -
Mtr1g4223 994 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Mtr1g4223 994 PANTHER DUAL SPECIFICITY PROTEIN KINASE 359 994 - -
Mtr1g4223 994 MobiDBLite consensus disorder prediction 22 36 - -
Mtr1g4223 994 MobiDBLite consensus disorder prediction 272 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4223 Mtr-Chr1 53901877 53908702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4223 683 988 Core Cell Cycle Gene Families AT1G66750 29.968 1.44e-26 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Mtr1g4223 Pkinase 8.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4223 K08827 - gmx:100776908 1275.77