Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4217 ATGAAGGTTTTCGTGAAAACTCTTAAAGGAACTCACTTCGAAATCGAAGTCACGCCTCAAGACACGATTTCTGCAGTGAAGAAAAATATAGAAACCGTTCAAGGTGTAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGGAAAGTTTTGAAGGATGGTACCACCTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTCATTGTGATAATGCTTTCAAAGAGTAAGCCTGCGTCTGGTGAAGGGTCTACTACTTCAAATGCTCCTCCAGCGAAGGCCCCACAGACGAGTGCTGCTCCTACTTCAACCCCCCCAGTGTCTGTTTCACCTCAAGCTCCTGCTGCAACTGCGGCACCGCCTGCATCCGTTGCTGCACCTTCCCCAGCTCCAGCTCCTGCTCCTATATCTTCGGCAACTGCTACGGAAGGTTCTGATGTCTATGGGCAGGCTGCATCTAATCTGGTTGCCGGTAGCAACTTGGAGGGAACAGTTCAACAAATCCTAGATATGGGAGGAGGAAGCTGGGATAGGGATACTGTAATTCGTGCTCTTCGAGCTGCCTTCAATAACCCTGAGAGAGCGGTTGAATATTTGTATTCAGGTATACCTGAACAAGCTGAAGCTCCAGCAGTGGCCCGAGTGCCTGCAAGTGCACAACCTGTGAATCCTGAGGCTGCAGCTGCAGCTCCACAAGCAGCTCAGCCTGCTCCTGTTACCTCAAGTGGACCTAATGCCAATCCTCTAGACCTCTTTCCCCAGGGCCTCCCAAATATTGGTGCTGGTGCTGCTGGTGCCGGCTCTCTGGATTTTCTACGCAATAGTCAACAATTCCAAGCATTGCGAGCTATGGTGCAGGCAAATCCACAAATATTGCAGCCCATGCTACAGGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGGGATCATCAGGCTGACTTCCTTCGCCTGATAAATGAACCTATGGAGGGCGGAGAAGGGAACAACCTATTGGGACAGATGGCTGCTGGCATGCCACAATCAGTAACTGTCACACCCGAGGAGCGCCAAGCTATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCTATAGTATTGGAGGTGTTCTTTGCTTGCAACAAAAATGAGGAATTGGCCGCCAACTACCTTTTAGACCACATGCATGAGTTTGACGAACAATGA 1194 0.4858 MKVFVKTLKGTHFEIEVTPQDTISAVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKSKPASGEGSTTSNAPPAKAPQTSAAPTSTPPVSVSPQAPAATAAPPASVAAPSPAPAPAPISSATATEGSDVYGQAASNLVAGSNLEGTVQQILDMGGGSWDRDTVIRALRAAFNNPERAVEYLYSGIPEQAEAPAVARVPASAQPVNPEAAAAAPQAAQPAPVTSSGPNANPLDLFPQGLPNIGAGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPMEGGEGNNLLGQMAAGMPQSVTVTPEERQAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFDEQ* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4217 397 Gene3D - 344 391 - -
Mtr1g4217 397 SMART CBM 268 311 IPR006636 -
Mtr1g4217 397 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 160 203 IPR015940 -
Mtr1g4217 397 CDD UBA2_RAD23_plant 348 390 - -
Mtr1g4217 397 SUPERFAMILY UBA-like 159 211 IPR009060 GO:0005515
Mtr1g4217 397 SMART uba_6 352 389 IPR015940 -
Mtr1g4217 397 SMART uba_6 162 202 IPR015940 -
Mtr1g4217 397 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Mtr1g4217 397 SUPERFAMILY XPC-binding domain 267 332 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mtr1g4217 397 MobiDBLite consensus disorder prediction 224 243 - -
Mtr1g4217 397 Pfam UBA/TS-N domain 165 200 IPR015940 -
Mtr1g4217 397 Pfam UBA/TS-N domain 352 387 IPR015940 -
Mtr1g4217 397 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 396 - -
Mtr1g4217 397 MobiDBLite consensus disorder prediction 78 142 - -
Mtr1g4217 397 TIGRFAM rad23: UV excision repair protein Rad23 1 395 IPR004806 GO:0006289
Mtr1g4217 397 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 349 390 IPR015940 -
Mtr1g4217 397 SMART ubq_7 1 75 IPR000626 GO:0005515
Mtr1g4217 397 SUPERFAMILY UBA-like 333 395 IPR009060 GO:0005515
Mtr1g4217 397 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Mtr1g4217 397 Gene3D - 1 80 - -
Mtr1g4217 397 PRINTS DNA repair protein Rad23 signature 296 318 IPR004806 GO:0006289
Mtr1g4217 397 PRINTS DNA repair protein Rad23 signature 346 362 IPR004806 GO:0006289
Mtr1g4217 397 PRINTS DNA repair protein Rad23 signature 363 377 IPR004806 GO:0006289
Mtr1g4217 397 PRINTS DNA repair protein Rad23 signature 378 393 IPR004806 GO:0006289
Mtr1g4217 397 Gene3D - 155 205 - -
Mtr1g4217 397 MobiDBLite consensus disorder prediction 79 112 - -
Mtr1g4217 397 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 396 - -
Mtr1g4217 397 Gene3D - 261 326 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mtr1g4217 397 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Mtr1g4217 397 Pfam XPC-binding domain 270 325 IPR015360 GO:0003684|GO:0006289|GO:0043161
Mtr1g4217 397 CDD UBA1_Rad23_plant 156 205 - -
Mtr1g4217 397 CDD Ubl_Rad23 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4217 Mtr-Chr1 53861027 53865151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4217 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 9.87e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4217 K10839 - gmx:100814162 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4217 1 53861027 53865151 Mtr1g4217 1 53861027 53865151 ECH