Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4204 ATGAGACCAGATGGAAATCCATTAGACCTTAACAATCTGCCTGATGACAACTCTAGTAGAGATCACCATGCTAAACAACTTCTTTCTGACACCACCTCCCCACCACCTGTTACAGGTTATAAGGAAAAGGAAAACGGCGAAGATGATGATGATAGAAAAGACGAGAAGGTCTATGAATGTAGATTTTGTTCCCTCAAATTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGTCATCGCCAAGGCTAG 252 0.4405 MRPDGNPLDLNNLPDDNSSRDHHAKQLLSDTTSPPPVTGYKEKENGEDDDDRKDEKVYECRFCSLKFCKSQALGGHMNRHRQG* 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4204 83 PANTHER ZINC FINGER PROTEIN JAGGED 1 82 IPR045320 GO:0003700
Mtr1g4204 83 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 83 IPR013087 -
Mtr1g4204 83 MobiDBLite consensus disorder prediction 1 53 - -
Mtr1g4204 83 Gene3D Classic Zinc Finger 43 83 - -
Mtr1g4204 83 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Mtr1g4204 83 SUPERFAMILY beta-beta-alpha zinc fingers 54 81 IPR036236 -
Mtr1g4204 83 PANTHER ZINC FINGER PROTEIN JAGGED 1 82 IPR031113 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4204 Mtr-Chr1 53666286 53667245 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4204 1 82 C2H2 Transcription Factor Family AT1G13400 53.012 1.64e-15 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g4204 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4204 - - mtr:MTR_1g110740 101.679