Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4180 ATGATAGCTATTGGAGTTGCGGTGCTGATGTTGTTGGCTTACTGCATCAAGAGAAAAGTCTTTCCTCCAGCATTTTTTTTGTTCAGGAAGGAGAGTTCGACGCATCAAATTATTGAGGAGTTCTTGAAAGAACATGGACCTCTTCCAGCTGCAAGGTACAATTATTCAGATGTCAAAAAAATAACTAACTCTTTTAGAAACAAATTAGGACAAGGAGGGTACGGAAGTGTATACAAAGGGAAGTTAAATGATGAGCGTATTGTTGCAGTGAAAGTTTTAAGTGAACCAAAAGGCGACGGCGAAGATTTTATTAATGAAGTTGCGAGTATTAGTAGAACTTCGCATGTCAACGTTGTTAGACTTTTGGGGTTCTGTTTGGATGGTTCTAAAAAGGCACTAATATACGAATTCATGCCTAATGGATCTCTTGAGAAGTTCATATACGAAGAGAAAAATCCATTGAAGGATGATCGCCAGTTGGATTGCAAAACATTGTATGATATTGCAGTTGGGGTTGCTCGTGGACTAGAGTACTTGCACAGAGGCTGCAACACTAGAATCTTGCATTTTGACATAAAACCTCATAATATATTACTAGATGATAATTTTTGTCCAAAAATTTCAGATTTTGGACTTGCTAAAATATGTCTAAGAAAAGAAAGCATTGTATCAATATTTGGTGCAAGGGGAACACCAGGATATATTGCTCCAGAGTTGTTCTCTAGAAATTTTGGTGGGGTGTCACATAAGTCAGATGTCTACAGTTACGGAATGATGGTTTTAGAGATGGTTGGTCGAAGAAAGAACATTAAGGTTGAAGTTGATTGTTCTAGCGAGTTATATTTTCCACACTGGATTTACAAGCGTCTTGAATTGAATCAGGATCTTGGACTCAAGAGTATTAAAAATGAAAATGATGAAGAAATGGTCAGAAAAATGTCAGTGGTGAGTTTATGGTGCATACAAACCGACCCTTCTCATCGACCAGCAATGCATAAAGTGGTGGAAATGCTGGAAGGGAGTCTTCAAATGCTGGAAATACCACCCAAACCCTTTTTGTCTTCTCCTTCAACATCTCCAATCCATTTATCATCTGAAATATTGTGA 1107 0.3776 MIAIGVAVLMLLAYCIKRKVFPPAFFLFRKESSTHQIIEEFLKEHGPLPAARYNYSDVKKITNSFRNKLGQGGYGSVYKGKLNDERIVAVKVLSEPKGDGEDFINEVASISRTSHVNVVRLLGFCLDGSKKALIYEFMPNGSLEKFIYEEKNPLKDDRQLDCKTLYDIAVGVARGLEYLHRGCNTRILHFDIKPHNILLDDNFCPKISDFGLAKICLRKESIVSIFGARGTPGYIAPELFSRNFGGVSHKSDVYSYGMMVLEMVGRRKNIKVEVDCSSELYFPHWIYKRLELNQDLGLKSIKNENDEEMVRKMSVVSLWCIQTDPSHRPAMHKVVEMLEGSLQMLEIPPKPFLSSPSTSPIHLSSEIL* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4180 368 Gene3D Transferase(Phosphotransferase) domain 1 138 347 - -
Mtr1g4180 368 Pfam Protein kinase domain 67 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g4180 368 ProSiteProfiles Protein kinase domain profile. 63 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g4180 368 SMART serkin_6 63 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g4180 368 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 10 365 - -
Mtr1g4180 368 Gene3D Phosphorylase Kinase; domain 1 39 137 - -
Mtr1g4180 368 SUPERFAMILY Protein kinase-like (PK-like) 47 339 IPR011009 -
Mtr1g4180 368 PANTHER RUST RESISTANCE KINASE LR10-RELATED 10 365 IPR045874 GO:0004672
Mtr1g4180 368 ProSitePatterns Protein kinases ATP-binding region signature. 69 91 IPR017441 GO:0005524
Mtr1g4180 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4180 Mtr-Chr1 53399967 53401480 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4180 52 354 Receptor kinase-like Gene Family AT4G18250 59.486 3.21e-127 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Mtr1g4180 Pkinase 3.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4180 - - cam:101490487 657.907