Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4176 ATGTTGTTTGCATGCTGCACCAAGACAAAGATATTCCCTCCAACATTTCATCTGTTCAAGAAGGAGAGTTCAACCCATCAAATTATTGAGGAGTTTTTGAAAGAACATGGACCTCTTCCAGCTGCTAGGTATAGTTATGCAGATGTCAAGAAAATAACAAACTCTTTTAGAAACAAATTAGGCCAAGGAGGGTTCGGAAGTGTATACAAAGGGAGGTTACGTGATGAGCGTGTTGTTGCTGTGAAGGTTTTAAGTGAATCAAAAGGCGACGGGGATGATTTCATTAATGAAGTTGCGAGTATCAATAGAACTTCGCATGTCAACGTTCTTAGACTTTTGGGGTTCTGTTTGGATGGTTCTAAAAAGGCACTAATATACGAATTCATGCTTAATGGATCTCTTGAGAAGTTCATATACGAGAAAAATCCATTGAAGGATGATGGCCAATTGGAATGCAAAATGTTGTATGATATTGCTGTTGGCGTTGCTCGTGGGTTAGAGTACATGCACAGAGGCTGCAACACTAGAATCTTACATTTTGACATAAAACCTCATAATATATTACTTGACGATGATTTGTGTCCAAAAATTTCAGATTTTGGACTTGCTAAAATATGTCCAAGAAAAGAAAGCATTGTATCAATATTTGGTGCAAGGGGGACACCAGGATATATTGCTCCAGAGCTGTTCTCTAGACATTTTGGTGGGGTGTCACACAAATCAGATGTCTACAGTTATGGAATGATGGTTTTAGAAATGGTTGGTCGAAGAAAGAACATCAAAGTTGAAGTGGATTGTTCTAGCGAGTTATATTTTCCACATTGGATCTACAAGCGTCTTGAATTGAATCAAGATCTTGGACTCAAGTGTATTAAAAATGAAATTGATGAAGAGATGGTAAGAAAGATGACAATGGTGAGTTTATGGTGCATACCAACCGACCCTTCACATCGACCAGCAATGAATAAAGTGGTGGAAATGCTAGAAGGGAGCCTTCAAGTGCTAGAAATACCACCCAAACCCTTTTTGTCCTCTCCTTCAAGATCTTTGATCAATTTATCATCTGAAACACTTTAA 1077 0.3825 MLFACCTKTKIFPPTFHLFKKESSTHQIIEEFLKEHGPLPAARYSYADVKKITNSFRNKLGQGGFGSVYKGRLRDERVVAVKVLSESKGDGDDFINEVASINRTSHVNVLRLLGFCLDGSKKALIYEFMLNGSLEKFIYEKNPLKDDGQLECKMLYDIAVGVARGLEYMHRGCNTRILHFDIKPHNILLDDDLCPKISDFGLAKICPRKESIVSIFGARGTPGYIAPELFSRHFGGVSHKSDVYSYGMMVLEMVGRRKNIKVEVDCSSELYFPHWIYKRLELNQDLGLKCIKNEIDEEMVRKMTMVSLWCIPTDPSHRPAMNKVVEMLEGSLQVLEIPPKPFLSSPSRSLINLSSETL* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4176 358 PANTHER RUST RESISTANCE KINASE LR10-RELATED 18 354 IPR045874 GO:0004672
Mtr1g4176 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Mtr1g4176 358 Gene3D Phosphorylase Kinase; domain 1 29 128 - -
Mtr1g4176 358 SMART serkin_6 54 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g4176 358 ProSiteProfiles Protein kinase domain profile. 54 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g4176 358 ProSitePatterns Protein kinases ATP-binding region signature. 60 82 IPR017441 GO:0005524
Mtr1g4176 358 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 18 354 - -
Mtr1g4176 358 SUPERFAMILY Protein kinase-like (PK-like) 38 329 IPR011009 -
Mtr1g4176 358 Gene3D Transferase(Phosphotransferase) domain 1 129 342 - -
Mtr1g4176 358 Pfam Protein kinase domain 58 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4176 Mtr-Chr1 53372679 53373779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4176 43 344 Receptor kinase-like Gene Family AT4G18250 59.355 7.32e-126 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Mtr1g4176 Pkinase 2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4176 - - mtr:MTR_1g110140 727.243