LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr1g4168	ATGGCTTCAAGGTCATATTCCAACTTGTTAGATCTTACTTCATGTGGCTCGCCGTCTTTCGGTCGCGAAAAGAAAAGGCTTCCTAGAGTTGCAACTGTTGCTGGAGTGCTATCTGAATTAGATGATGAAACCAACAACAGTGTTGGTTCTGATGCTCCTTCCTCCATTTCTCAAGAGAGGATGATCATTGTTGGTAACCAGCTTCCATTGAAGGCACAAAGGAAAGAGGAGAATGGTAAGTGGGAATTCACTTGGGATGAGGATTCACTTCTTTTACAGCTGAAAGATGGTCTTGGTGATGATGTTGAAACAATCTATATTGGTTGTCTTAAAGAAGAAATTGATCCAATTGAGCAAGATGATGTTGCTCAGTACTTGCTTGACAATTTCAAATGTGTACCAACTTTCCTTCCACCTGAACTTTTCACTAAATTCTATCATGGTTTCTGTAAACAACATCTATGGCCTTTGTTTCACTACATGCTTCCTCTGTCGCCTGATCTTGGTGGTCGATTTGATCGATCTCTTTGGCAGGCTTATGTTTCTGTCAACAAAATATTTGCTGATAAAGTGATGGAAGTTATTAACCCTGATGAGGATTTTGTTTGGGTTCATGACTACCACTTGATGGTTCTTCCAACATTTTTGAGAAAGAGATTTAATAGGGCAAGGCTTGGATTCTTCCTTCATAGTCCTTTTCCTTCGTCCGAGATATACCGAACCCTTCCTGTTAGAGACGAACTTCTTAGAGCTCTTTTGAATTCTGACCTTATAGGGTTTCATACTTTCGACTATGCTAGGCATTTCCTCTCCTGTTGCAGTAGAATGTTGGGAATTGCTTATCAGTCCAAGCGAGGCTACATAGGTCTTGAGTACTATGGAAGAACTGTTAGCATTAAGATTCTTCCTGTTGGTATTCATATAGGTCAGCTTGAGTCAGTCATGAATCTTTCTGAGACAGAAAGCAAGGTTGCTGAGTTAAGAAACAGGTTCAAAGGTCAAACTGTGATGCTTGGGGTGGATGACATGGATATCTTCAAAGGAATCAGCTTAAAACTTTTGGCAATGGAACAATTGCTTTTACAACATGCTGAAATGAGGGGAAAAGTTGTTCTGGTTCAAATCGCAAACCCTGCTAGAGGACGCGGAAAGGATGTGCAAGAAGTGCAGTGTGAAACTTATGCAACCGTGAAAAGGATAAACGACACATTTGGAAGGCCTGGATACACACCTGTAGTCTTGATCGATACAACACTCCAGAGTTACGAGAGAATCGCTTACTATGCAATTGCGGAATGTTGTCTTGTTACAGCAGTGAGAGATGGGATGAATCTTATACCTTATGAGTATATCATTTGTAGACAGGGAAACGAGAAGATAGATGAGATTTTAGGAATAAACTCAACCGTCCAAAAGAAGAGCATGCTGGTGGTGTCTGAATTCATTGGCTGCTCCCCATCATTAAGCGGCGCGATTCGGGTGAATCCATGGAATATTGATGCTGTTGCTGAAGCTATGGATTCCGCCTTAATGGTCCCAGAGTCTGAAAAACAAATGCGTCATGAGAAGCATTATAGGTACGTTAGTACGCACGATGTTGCATATTGGGCGCGTAGCTTCTTGCAGGATCTGGAAAGGGCTTGTAGAGATCATCTGAGGAGAAGATGCTGGGGAATTGGTTTTGGTTTAGGATTTCGAGTAATAGCTTTGGATCCAAACTTTAGAAAGCTATCTGTGGAACACATTGTTTCAGCTTATAAGAGGACCAAGCACCGAGCGATTCTTTTGGATTATGATAGTACTATGGTGCAGCCTGGATCAATTAGTACAACACCTAGTGCTGAAGCTGTTTCAATCTTGAACAGCTTGTGCAGTGATACCAGGAATTGTGTTTTCATTGTGAGTGGAAAGGAGAGAAACACTCTCACTGAATGGTTTTCTTCATGTGAAAAGCTTGGACTTGCTGCAGAACACGGCTATTTTGTGAAGACAAGTCATACTGAAGAATGGGAAGCTTGTGTTTCTGTGCCTGATTTTGACTGGAAACAGATTGCTGAGCCAGTTATGCAGTTATATACAGAAACTACTGATGGTTCTAACATAGAGTCCAAAGAGAGTGCTCTTGTTTGGAATTACGAGTTTGCTGACCGAGATTTCGGTTCATGTCAAGCTAAGGAGCTTCTTGATCATCTGGAAAGTGTTCTTGCTAATGAGCCTGTTTCAGTTAAAAGTGGCCCATACATTGTGGAAGTTAAACCTCAGGGTGTGAGTAAGGGTATTGTGGCAGAGCGTATTCTGATAACAATGCAACAAAAGGGAGTGATTCCAGATTTTGTTCTATGCATTGGTGATGACAGATCAGATGAGGACATGTTTGGGGTAATAACAAGTGCAAGGGCATCTCTATCGCCTATTGCAGACGTGTTTCCTTGCACTGTTGGTCAGAAACCAAGCAAAGCCAAATATTACTTGGAAGACACAAGTGAGATTTTGAGGATGTTGCAAGGTCTTGCCAATGCTTCTGAACAAACTGCTGCTAGAAGTTCTTCCCAGTTATCTCCTCCTTAA	2568	0.4163	MASRSYSNLLDLTSCGSPSFGREKKRLPRVATVAGVLSELDDETNNSVGSDAPSSISQERMIIVGNQLPLKAQRKEENGKWEFTWDEDSLLLQLKDGLGDDVETIYIGCLKEEIDPIEQDDVAQYLLDNFKCVPTFLPPELFTKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYVSVNKIFADKVMEVINPDEDFVWVHDYHLMVLPTFLRKRFNRARLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGIAYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLESVMNLSETESKVAELRNRFKGQTVMLGVDDMDIFKGISLKLLAMEQLLLQHAEMRGKVVLVQIANPARGRGKDVQEVQCETYATVKRINDTFGRPGYTPVVLIDTTLQSYERIAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEKIDEILGINSTVQKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMDSALMVPESEKQMRHEKHYRYVSTHDVAYWARSFLQDLERACRDHLRRRCWGIGFGLGFRVIALDPNFRKLSVEHIVSAYKRTKHRAILLDYDSTMVQPGSISTTPSAEAVSILNSLCSDTRNCVFIVSGKERNTLTEWFSSCEKLGLAAEHGYFVKTSHTEEWEACVSVPDFDWKQIAEPVMQLYTETTDGSNIESKESALVWNYEFADRDFGSCQAKELLDHLESVLANEPVSVKSGPYIVEVKPQGVSKGIVAERILITMQQKGVIPDFVLCIGDDRSDEDMFGVITSARASLSPIADVFPCTVGQKPSKAKYYLEDTSEILRMLQGLANASEQTAARSSSQLSPP*	856

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr1g4168	855	Pfam	Glycosyltransferase family 20	60	545	IPR001830	GO:0003824\|GO:0005992
	Mtr1g4168	855	CDD	GT20_TPS	60	545	IPR001830	GO:0003824\|GO:0005992
	Mtr1g4168	855	Gene3D	-	591	702	IPR023214	-
	Mtr1g4168	855	Gene3D	-	717	851	IPR023214	-
	Mtr1g4168	855	Gene3D	Glycogen Phosphorylase B;	314	529	-	-
	Mtr1g4168	855	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	60	549	-	-
	Mtr1g4168	855	SUPERFAMILY	HAD-like	592	838	IPR036412	-
	Mtr1g4168	855	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	594	794	IPR006379	-
	Mtr1g4168	855	CDD	HAD_TPP	593	829	-	-
	Mtr1g4168	855	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6	1	845	-	-
	Mtr1g4168	855	Gene3D	Glycogen Phosphorylase B;	53	313	-	-
	Mtr1g4168	855	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	845	IPR001830	GO:0003824\|GO:0005992
	Mtr1g4168	855	Pfam	Trehalose-phosphatase	595	828	IPR003337	GO:0003824\|GO:0005992
	Mtr1g4168	855	TIGRFAM	T6PP: trehalose-phosphatase	590	838	IPR003337	GO:0003824\|GO:0005992

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr1g4168	Mtr-Chr1	53271270	53275468	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr1g4168	1	855	Trehalose Biosynthesis Gene Families	AT4G17770	77.156	0.0	1414

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr1g4168	K16055		-	gmx:100782799	1546.56