Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4152 ATGGGTTTACAAAGCCAGCTAAACGACGTGTCGTCTGATTCAATTCCTTTACTTGTTCTGATGCACATAGCCACCTGCGTCAATTACATCCGTTCGATGCTTCTCAATTTCCTCCAATCCATAGGTCTCTCACGCCTCCAAACTGATCAGATCGTCGACGATCACTTCATCGCCGCCGTCGGATCGGGTCTCGCCGGACTCATCATGCTCTCCGATCAACTCTCCCTCAACAATCAATTCTTCTACAAATACGAAGACGCCGCTTCCGCCGACAATCACCGCTGCGTCTTCTGCCAATCCAACTTCGAAAACGGCGATCATGTTCGTAAGCTTCCTTGCCGCCACGTCTTCCACCGTCACTGTCTCAACGGTTGGTTCCACCGCTTCAACTTCAATTGTCCGTTATGCCGTTGTTCGCTACACTCCGACGAGCGCGTGGCACTCACCGAACGCCGTGTCGGTAGCCAACTCATCTCATGGTTCACCCTTCGTTGA 495 0.5192 MGLQSQLNDVSSDSIPLLVLMHIATCVNYIRSMLLNFLQSIGLSRLQTDQIVDDHFIAAVGSGLAGLIMLSDQLSLNNQFFYKYEDAASADNHRCVFCQSNFENGDHVRKLPCRHVFHRHCLNGWFHRFNFNCPLCRCSLHSDERVALTERRVGSQLISWFTLR* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4152 164 SUPERFAMILY RING/U-box 76 143 - -
Mtr1g4152 164 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Mtr1g4152 164 SMART ring_2 95 136 IPR001841 -
Mtr1g4152 164 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA2A 1 162 - -
Mtr1g4152 164 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 162 - -
Mtr1g4152 164 Pfam Ring finger domain 94 137 IPR001841 -
Mtr1g4152 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 143 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4152 Mtr-Chr1 53090923 53091821 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4152 1 163 C3H Transcription Factor Family AT1G15100 50.307 2.46e-47 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4152 K16282 - gmx:100803789 239.965