Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr1g4152 | ATGGGTTTACAAAGCCAGCTAAACGACGTGTCGTCTGATTCAATTCCTTTACTTGTTCTGATGCACATAGCCACCTGCGTCAATTACATCCGTTCGATGCTTCTCAATTTCCTCCAATCCATAGGTCTCTCACGCCTCCAAACTGATCAGATCGTCGACGATCACTTCATCGCCGCCGTCGGATCGGGTCTCGCCGGACTCATCATGCTCTCCGATCAACTCTCCCTCAACAATCAATTCTTCTACAAATACGAAGACGCCGCTTCCGCCGACAATCACCGCTGCGTCTTCTGCCAATCCAACTTCGAAAACGGCGATCATGTTCGTAAGCTTCCTTGCCGCCACGTCTTCCACCGTCACTGTCTCAACGGTTGGTTCCACCGCTTCAACTTCAATTGTCCGTTATGCCGTTGTTCGCTACACTCCGACGAGCGCGTGGCACTCACCGAACGCCGTGTCGGTAGCCAACTCATCTCATGGTTCACCCTTCGTTGA | 495 | 0.5192 | MGLQSQLNDVSSDSIPLLVLMHIATCVNYIRSMLLNFLQSIGLSRLQTDQIVDDHFIAAVGSGLAGLIMLSDQLSLNNQFFYKYEDAASADNHRCVFCQSNFENGDHVRKLPCRHVFHRHCLNGWFHRFNFNCPLCRCSLHSDERVALTERRVGSQLISWFTLR* | 165 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr1g4152 | 164 | SUPERFAMILY | RING/U-box | 76 | 143 | - | - | |
Mtr1g4152 | 164 | ProSiteProfiles | Zinc finger RING-type profile. | 95 | 137 | IPR001841 | - | |
Mtr1g4152 | 164 | SMART | ring_2 | 95 | 136 | IPR001841 | - | |
Mtr1g4152 | 164 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RHA2A | 1 | 162 | - | - | |
Mtr1g4152 | 164 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 1 | 162 | - | - | |
Mtr1g4152 | 164 | Pfam | Ring finger domain | 94 | 137 | IPR001841 | - | |
Mtr1g4152 | 164 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 143 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr1g4152 | Mtr-Chr1 | 53090923 | 53091821 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr1g4152 | 1 | 163 | C3H Transcription Factor Family | AT1G15100 | 50.307 | 2.46e-47 | 149 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr1g4152 | K16282 | - | gmx:100803789 | 239.965 |