Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4133 ATGACCAGCAACCCAAAGAATATGTACAGTCTCACTGCTCCTGCTATTCGTTTCTTTAAGATTGTTACCTCAACAAATATTCAAGATGGAACCCTTAGAATTCCAAATGCTTTCACTGAGAAATATATCGGTGATTTATCAAAGCCAATGTTTCTCAAGACTCCCGATGTCAAAGAATGGGAAATACATTTGACTAAAAAGGATGGTGATATTTGGATTCAAAGGGGTTGGAAGGAATTTGCTACACATTATTCATTAGATCATGGTCACATGGTGCTGTTTCAATATCAGAAAACCTCTCATTTTGAGGTTTACATTTTTGACAAGAGTACTTTTGAAATCGAATATCGTGTTGATGGTAATAATCAACATGAACAGAGCAATCCAATTGAAATTTTGGATGAGCAACCTTCTTACAAGAAGAGTAGACCAAAATCACAAATTTCAAGTTCTCAACCACTTAAGAAATTGAGAATTGACGCAAGTGAAGATGTTGGAACAAGCTCCAAATCGCAAAACATTCCTAAACTTGTCCAAGTTAAAGAAGAGATTGATTCTACCACTAAATGCCTGAATGTGAAGCATGGTCAAGAGCAGAGGAATTCAACTGCTAAAATTGTTGAAGCTTTAAACAAAGCAAAAAACTATGAATCTAACAATCCCTTTTTCACTGCTATCATGACATATTCTTATGTTAATCAATACATGCATGTCCCTTTAAATTTTGAACAAAAGTATTTGAAGGAACAGCAAAGCGAAATCGCCCTTCAGGTCTTGGATGATGAGAGAACATGGATTGTTAAATATTGTCTGAGAAAAATGAGTAACGGATGGAAAACATTTGTATCTGACAATAATTTGAAATTGGGAGATGTTTGCCTTTTTGAGATGATCAATAGCAAATCCTATGCTTTTAAAGTACTAATTTTTCGAGTCGACGAAGAACAACATTCCCTTCCACCACAAGTTCATGGAGATGGAGTTAACTGGTTAGAAACTGCAGGAATCACAGAAGTTAAAAGTAAAACTATTATGTCATATAAAGGAACGAAGGAAACTCAAAGAAACTCACTGCAGGCTAGGCCATGCTCCTTCAAAAATTCTGAAGCTAAGAAAGAAGCCAATCAATTCACATCCACTTTGGAAAAACCAAATTTCACTATCAATTTGAGATCAAGTCATTGGGATGTTTACAGACCACGTGTACGAAATTCATTCTCGAGCAAGTACTTGGGTCCCAAAAAGAAGACTGCAATGTTACAGTTTGAGGAAAAATTGTGGCCTGTACAATTGATGTATTATCCATCCGAACCAGCAACAAAGTTGGGTGAAGGTTGGAGTCTGTTTGTAGAAGAAAATAAATTGCAGGCTGGAGATGTATGTGTTTTTGTGCTTGCCAACAAGGAAGATGTTGTGCTTGATGTTCATATTTTTAGAGGACGCAGTTAG 1449 0.3616 MTSNPKNMYSLTAPAIRFFKIVTSTNIQDGTLRIPNAFTEKYIGDLSKPMFLKTPDVKEWEIHLTKKDGDIWIQRGWKEFATHYSLDHGHMVLFQYQKTSHFEVYIFDKSTFEIEYRVDGNNQHEQSNPIEILDEQPSYKKSRPKSQISSSQPLKKLRIDASEDVGTSSKSQNIPKLVQVKEEIDSTTKCLNVKHGQEQRNSTAKIVEALNKAKNYESNNPFFTAIMTYSYVNQYMHVPLNFEQKYLKEQQSEIALQVLDDERTWIVKYCLRKMSNGWKTFVSDNNLKLGDVCLFEMINSKSYAFKVLIFRVDEEQHSLPPQVHGDGVNWLETAGITEVKSKTIMSYKGTKETQRNSLQARPCSFKNSEAKKEANQFTSTLEKPNFTINLRSSHWDVYRPRVRNSFSSKYLGPKKKTAMLQFEEKLWPVQLMYYPSEPATKLGEGWSLFVEENKLQAGDVCVFVLANKEDVVLDVHIFRGRS* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4133 482 CDD B3_DNA 384 479 IPR003340 GO:0003677
Mtr1g4133 482 Pfam B3 DNA binding domain 402 480 IPR003340 GO:0003677
Mtr1g4133 482 Pfam B3 DNA binding domain 223 311 IPR003340 GO:0003677
Mtr1g4133 482 Pfam B3 DNA binding domain 18 109 IPR003340 GO:0003677
Mtr1g4133 482 CDD B3_DNA 17 108 IPR003340 GO:0003677
Mtr1g4133 482 SMART B3_2 18 110 IPR003340 GO:0003677
Mtr1g4133 482 SMART B3_2 223 313 IPR003340 GO:0003677
Mtr1g4133 482 SMART B3_2 385 481 IPR003340 GO:0003677
Mtr1g4133 482 MobiDBLite consensus disorder prediction 123 154 - -
Mtr1g4133 482 ProSiteProfiles B3 DNA-binding domain profile. 427 481 IPR003340 GO:0003677
Mtr1g4133 482 ProSiteProfiles B3 DNA-binding domain profile. 221 313 IPR003340 GO:0003677
Mtr1g4133 482 SUPERFAMILY DNA-binding pseudobarrel domain 381 479 IPR015300 -
Mtr1g4133 482 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 312 - -
Mtr1g4133 482 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 350 479 - -
Mtr1g4133 482 SUPERFAMILY DNA-binding pseudobarrel domain 15 110 IPR015300 -
Mtr1g4133 482 CDD B3_DNA 221 311 IPR003340 GO:0003677
Mtr1g4133 482 Gene3D - 202 315 IPR015300 -
Mtr1g4133 482 Gene3D - 364 481 IPR015300 -
Mtr1g4133 482 ProSiteProfiles B3 DNA-binding domain profile. 17 110 IPR003340 GO:0003677
Mtr1g4133 482 Gene3D - 13 111 IPR015300 -
Mtr1g4133 482 PANTHER B3 DOMAIN-CONTAINING 350 479 - -
Mtr1g4133 482 PANTHER B3 DOMAIN-CONTAINING 12 312 - -
Mtr1g4133 482 SUPERFAMILY DNA-binding pseudobarrel domain 216 313 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4133 Mtr-Chr1 52853716 52856688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4133 368 479 B3 DNA Binding Superfamily AT3G18990 35.897 8.39e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g4133 B3 1.6e-11 CL0405