Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4121 ATGTCGAGTGTAAGGAAAGGCCGAGGCCGCCAAAAGATCGAGATGAAAAAGATTAGCAACGAGAGCAACTTGCAAGTTACTTTCTCAAAGCACCATAACGGGCTCTTCAAGAAGGCAAGTGAGCTTTGCACCCTTTGTGGTGCAGATGTTGCTCTCGTTGTATTCTCACCTAGTGGAAAGGTATTTTCCTTTGGTCACCCCAATCTTGATACGGTCATAGACCGCTTTCTTTCTCTCATCCCAACCCAAAACGATGGCACCATGCAATTCATTGAGGCTCACCGCAATGCCAACGTGCGTGAACTCAATGCTCAGCTGACTCAAATCAATAACACGTTGGATGCCGAGAAGAAGATTGGTGATGAGCTGAGCAATTTGCACAAGGAAACTGAGGCTAAGTTTTGGTGGGCTTGTGTTGTTGATGGGATGAATAGGGATCAACTTGAAATATTTAAGAAAGCTTTGGAGGAGCTTAAGAAACTTGTAATTCAGCATGCTGCTACTCGAACTCTTCCATTTTTTGTTGGCAACACTTCATCCTCGAACATTTATCTCCATCATCAACCAAATCCTCAACAAGCTGAAATGTTTCCGCCACAAATTTTTCAAAACGCTATGTTGCAATTGCAAACTCATTTCTTTGATGGCTCGATGATTCCTCACCATGTCTTCAATAATATGGTGTAA 687 0.4294 MSSVRKGRGRQKIEMKKISNESNLQVTFSKHHNGLFKKASELCTLCGADVALVVFSPSGKVFSFGHPNLDTVIDRFLSLIPTQNDGTMQFIEAHRNANVRELNAQLTQINNTLDAEKKIGDELSNLHKETEAKFWWACVVDGMNRDQLEIFKKALEELKKLVIQHAATRTLPFFVGNTSSSNIYLHHQPNPQQAEMFPPQIFQNAMLQLQTHFFDGSMIPHHVFNNMV* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4121 228 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mtr1g4121 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mtr1g4121 228 Gene3D - 87 168 - -
Mtr1g4121 228 Gene3D - 20 86 IPR036879 GO:0003677|GO:0046983
Mtr1g4121 228 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Mtr1g4121 228 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mtr1g4121 228 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mtr1g4121 228 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mtr1g4121 228 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 165 - -
Mtr1g4121 228 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Mtr1g4121 228 PANTHER MADS BOX PROTEIN 7 165 - -
Mtr1g4121 228 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mtr1g4121 228 Coils Coil 99 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4121 Mtr-Chr1 52749218 52749904 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4121 4 181 Type I MADS-box Gene Family AT5G60440 53.514 7.69e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr1g4121 SRF-TF 6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4121 - - gmx:100794751 262.692