Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4119 ATGGGGGATCACTTTGATTTATTGGTTGATCGGTTGCTCACTGAATCGACATTAGAAGCTGCGATTGAAAGCAGAAACCGTGCGATGCAGGCTGCGTCCTCGGAGGTGACTAGCGCAGCAGTCGATCATTCTTTGTTGAAGATGGGTATCAAATGTTCCGGGAAGCTGGCAGAATGCAGGATATGCCATGATGATGATGATGATTCCAATATGGAGACGCCCTGTTCCTGTTGTGGTAGTTTGAAGTACGCCCATAGAAGATGTATACAGCGGTGGTGTAATGAGAAGGGCGACACCACCTGTGAGATATGCCATCAGCCATTCAAGCCTGATTACACAGCTCCTCCTCCACTTTTTCAGTTTGGACGTATTCCAATGAGTTTCAGGGGAAATTGGGAAATTTCGCGAAGAGACTTAAACAGTACTCATTTGGTTAGCATGGTTCCCACTGACCAGAACCTTATCAATTCTAACTATGATCAATATTCAACCTCTTCTTCAGGAAGTTTGATATGCTGTCGTTCAGCTGCTGTCATTTTCATGGTTCTGCTGATTTTAAGACATACTCTTCCCCTCATAATTAGTGGAAATAAAGACTATTCTTTCCCACTTTTCATGGTGTTATTATTTCGGAGTGCTGGTATCGTTGTACCTATATACTTCATGGTTAGAGCCATGGCACTAATCCAGCGACATCGGAGACAACATCGAGAGCATCCTAGTGCCTTGGTCAGTTCATCTGATGATGAAATCGAGGAAGCAGCTTTGCAGTCGCAACCTCATATCATGCATTTAGTGTAA 801 0.4395 MGDHFDLLVDRLLTESTLEAAIESRNRAMQAASSEVTSAAVDHSLLKMGIKCSGKLAECRICHDDDDDSNMETPCSCCGSLKYAHRRCIQRWCNEKGDTTCEICHQPFKPDYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVPTDQNLINSNYDQYSTSSSGSLICCRSAAVIFMVLLILRHTLPLIISGNKDYSFPLFMVLLFRSAGIVVPIYFMVRAMALIQRHRRQHREHPSALVSSSDDEIEEAALQSQPHIMHLV* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4119 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 115 IPR013083 -
Mtr1g4119 266 PANTHER OS01G0121200 PROTEIN 1 263 - -
Mtr1g4119 266 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 263 IPR033275 -
Mtr1g4119 266 Pfam RING-variant domain 59 104 IPR011016 GO:0008270
Mtr1g4119 266 SUPERFAMILY RING/U-box 58 109 - -
Mtr1g4119 266 SMART ringv_2 58 105 IPR011016 GO:0008270
Mtr1g4119 266 CDD RING_CH-C4HC3_MARCH 59 105 - -
Mtr1g4119 266 Pfam Protein of unknown function (DUF3675) 110 226 IPR022143 -
Mtr1g4119 266 ProSiteProfiles Zinc finger RING-CH-type profile. 51 111 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4119 Mtr-Chr1 52723319 52726870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4119 58 105 C3H Transcription Factor Family AT2G37950 45.098 1.76e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4119 - - vun:114190540 453.751