Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4113 ATGGATTCATCATCAATTCCAGATTGTGTCGATAAATGGGTGAACAATATCCATGAACAAAATGTTCATCACGAGAAAGAAAGTATTGCCAATAGTGGACCTCACTTGGGAATGCAATTTGAATCTGAGGCGGTGGCATATGAATTTTATAATGATTACAGTAAAAGAATTGGATTTGGTATTCGTCGAGAATATGGAAATAAAAGCAGAATAGATGGAGTTTTGACTTCGAGAAGATTCACATGCTTCAAAGAGGGTGCGCGAGTTGTTGACAAAAGACGTCAACCGACGGCGGAGTCTAGAGCAGAAACCAGAACAGGATGCACAGCGCGTATGGTTATTTCACTTGATCGAAAGATAGGGAAATATAAGGTTGTTGACTTTGAATCTCAACATAACCACCTTCTGGTTCCACCTGAGTATGTTCATATGATTCGCTCCCATCGACACATATCTGAGGCACAAGCATCACAAATTGTCTTGGGAGATGAATCTGGCTTAAGACCAAGAGAGTTGCATCAATATATATCCAAGCAAGCTGGTGGGGTAGAGACTGTCGGTTTTACAAGCCAAGACCTTAAGAATTTGCTTAAAACCAAAAGGAAGCAATCACTAAAGTACGGTGAAGTGGGTGCCTTGATGACATATTTCAAACAAGAAAGTGAAAATCCATCATTCTTTTATGATTTTCAAATGGATGTTGATGAGCTAATAACAAATATATTTTGGGCGGATGCACAGATGATTAATGATTATGGATACTTTGGTGATATCATCACTTTTGACACCACTTACAAGACAAATAAGGATTATCGACCTTTCGGTGTATTTGTTGGACTTAATAATCACAGGCAAACCGTCATTTTTGGGGCAACATTGTTATATGATGAAACAATTCCTTCTTTTCAGTGGTTATTTGAAACTTTTCTGAAAGCAATGGGTGGAGAAAAGCCTAAAACCATTCTAACAGATCAAGATGCAGCAATGGCTAAAGCTATTTCTTTAGTTATGCCAAAAACATTTCATGGATTGTGCACTTGGCATATAAGACAGAATGCTCTTAGGCATGTGAACCATCTATATCAAAAGAGTTCGCGATTCCGTTTGGATTTTGAAGCATGCATAGATCTACACGAGGAGGAAAGTGAATTTTTGAAGGAATGGAATTCTTTACTTGTTGATCATAATGTTTTGAAAGATTCGTGGTTGCATTCAATTTTTAAATTGAAGGAAAAATGGGCATGGGCTTATGTTCGGAAAACATTCACGGCAGGTATGCGATCTACTCAATTAAGTGAGAGCTTTAATGCTGATTTGAAAAACCATTTGAAGTCAGATATAAATTTGGTACAATTTTTTACTCACTTTAAAAGGGCTGTCAATGCTAAACGGAACAATGAGTCAGAAGCAGAATATGATTCAAGACATAAGCTTCCTAAATTGAAAATGAAGAAGGCTCGTATGCTCTTACAAGCCGCAAGTGTTTACACTCCAAATTTTTTTGAGGAATTTCAAGAGGAATATGAAGAATATCAAGATACTTGCATAAAGGAGGTGAAAGAAGGTTTGTATGTTGTCACAAATTATGATAATGCAAAGGAGAGGATGGTAATAGGAAATCATATGGAACAAAAAGTTTCTTGTGATTGTCGTAAATTTGAGACACATGGCATCTTATGTAATCATGCTTTGAAAGTTTTAGATGTCATGAACATTAAGTTAATTCCCGAACACTACATACTAAAACGATGGACAAGAGATGCAAGGCTGGGAAGTAATCAAGGTTGGAGTGGGAGGCATGTTGAATTAGACCAAAAAGCCCATTTCATGAAGCGGTACAATGAGTTATGTCCTCAGTTGCTTAAATTGACCAATAGAGCTTCAGAATCTCATGAAACTTACACATTTTTGTCCAAAGTTTATGAAGAGTCCAGCAAAATAGTTAATGATATGTTGTCCAAAAAATATCTGGATGGAGAATCAAGTGGAATGGTTCATGTATCCATATCAATTGCGAATGATGAAGTCGACAACAACATAGACACCGTTGGCAAGGCAAAAGGCATAAAGACAAAGGATTGTCCACGTAAGAGTAAAAAACGTTATATGTCTTGGCTTGAAAAAGAACGTAAAAAGATAAAGATGCGCTCAGAAAAAAAGAAAAAATCTCAAGAAGGTTTAGTACAATCAAGCCAAGTAAGCAATGAAACTCAACATCAAGATACAATCCAAGCAACACAATCAAGCCAAGTTAACTCATTGTAA 2265 0.3664 MDSSSIPDCVDKWVNNIHEQNVHHEKESIANSGPHLGMQFESEAVAYEFYNDYSKRIGFGIRREYGNKSRIDGVLTSRRFTCFKEGARVVDKRRQPTAESRAETRTGCTARMVISLDRKIGKYKVVDFESQHNHLLVPPEYVHMIRSHRHISEAQASQIVLGDESGLRPRELHQYISKQAGGVETVGFTSQDLKNLLKTKRKQSLKYGEVGALMTYFKQESENPSFFYDFQMDVDELITNIFWADAQMINDYGYFGDIITFDTTYKTNKDYRPFGVFVGLNNHRQTVIFGATLLYDETIPSFQWLFETFLKAMGGEKPKTILTDQDAAMAKAISLVMPKTFHGLCTWHIRQNALRHVNHLYQKSSRFRLDFEACIDLHEEESEFLKEWNSLLVDHNVLKDSWLHSIFKLKEKWAWAYVRKTFTAGMRSTQLSESFNADLKNHLKSDINLVQFFTHFKRAVNAKRNNESEAEYDSRHKLPKLKMKKARMLLQAASVYTPNFFEEFQEEYEEYQDTCIKEVKEGLYVVTNYDNAKERMVIGNHMEQKVSCDCRKFETHGILCNHALKVLDVMNIKLIPEHYILKRWTRDARLGSNQGWSGRHVELDQKAHFMKRYNELCPQLLKLTNRASESHETYTFLSKVYEESSKIVNDMLSKKYLDGESSGMVHVSISIANDEVDNNIDTVGKAKGIKTKDCPRKSKKRYMSWLEKERKKIKMRSEKKKKSQEGLVQSSQVSNETQHQDTIQATQSSQVNSL* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4113 754 Pfam MULE transposase domain 258 352 IPR018289 -
Mtr1g4113 754 ProSiteProfiles Zinc finger SWIM-type profile. 524 571 IPR007527 GO:0008270
Mtr1g4113 754 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 17 683 IPR031052 GO:0006355
Mtr1g4113 754 MobiDBLite consensus disorder prediction 726 754 - -
Mtr1g4113 754 MobiDBLite consensus disorder prediction 710 754 - -
Mtr1g4113 754 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 17 683 - -
Mtr1g4113 754 SMART 26again6 546 573 IPR006564 GO:0008270
Mtr1g4113 754 Pfam FAR1 DNA-binding domain 48 138 IPR004330 -
Mtr1g4113 754 Coils Coil 501 521 - -
Mtr1g4113 754 MobiDBLite consensus disorder prediction 710 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4113 Mtr-Chr1 52672554 52674818 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr1g4113 MULE 1.4e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4113 - - cam:101500125 1216.06