Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4112 ATGGGGACGAAGGCAAAGAAAGCTTTGAAGAAGAAGAGTTTGAAAAGGGTCAATGCTATCAATAATAAACCATCTGAGCATGCTGCTGATTTTTTGCCGTTGGAAGGTGGTCCTGGTCGCAAACTTCCTGAACTTAAACAATTGGAGAATTCTTCCCCTGTTTTGTATATTGGTCGGATTCCACATGGCTTCTATGAGAAGGAGATGGAAGCTTATTTTGGACAATTTGGAACCATCAAGAGATTGAGAATTTCCAGAAATAAAAAGACTGGAAAATCAAGACATTTTGGGTTCATAGAATTTGAATCTCCTGAGGTAGCAAAAATTGTTGCTGATACTATGCACAATTATTTGCTTTTTGAACACCTACTACAGGTTTTTGTGGTACCTTCAGAACATGTTCATCCCCGATTATGGAAAGGATTCAATTACCGCTACAAGCCCTTGGACACACTCCAAATTGAACGAGAGCTACATGACAAGGAAAGAACATTGGAAGAACACAAAAAGTTGGTTGATAGAGTTATGAAGCGTGACAAAAAACGACGTAAAAAGATAGAGGCTGCTGGCATTGATTATGAATGTCCTGAGATTGTGGGTAACCTCCAGTCTGCTCCAAAGAAGATAAAGTTCGAAGACTGA 642 0.3941 MGTKAKKALKKKSLKRVNAINNKPSEHAADFLPLEGGPGRKLPELKQLENSSPVLYIGRIPHGFYEKEMEAYFGQFGTIKRLRISRNKKTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVFVVPSEHVHPRLWKGFNYRYKPLDTLQIERELHDKERTLEEHKKLVDRVMKRDKKRRKKIEAAGIDYECPEIVGNLQSAPKKIKFED* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4112 213 Coils Coil 151 178 - -
Mtr1g4112 213 CDD RRM_NIFK_like 54 126 - -
Mtr1g4112 213 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 122 IPR000504 GO:0003723
Mtr1g4112 213 Gene3D - 4 127 IPR012677 -
Mtr1g4112 213 PANTHER - 1 212 - -
Mtr1g4112 213 SUPERFAMILY RNA-binding domain, RBD 53 199 IPR035979 GO:0003676
Mtr1g4112 213 SMART rrm1_1 54 127 IPR000504 GO:0003723
Mtr1g4112 213 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 1 212 - -
Mtr1g4112 213 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 131 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4112 Mtr-Chr1 52652439 52655806 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4112 55 126 Eukaryotic Initiation Factors Gene Family AT1G71770 31.944 1.01e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4112 K14838 - gmx:100814276 319.316