Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4100 ATGGATCAAGTGCCTGAGGCTGATGTGTCTAAACCACCTCCTGTGAAAGTCCCATCTATGACACCTCCTTCTAAAGAGGATGATGGTCAAACTTCTGCTTCTATAGCCTCTGGACAAGATAATTCTGCCCGTGAAGCACCATCTAAGCTATCTCCCACAGGCATATCTTCTTGGGCCAAAAATTTAAAAATTTCTCAGCCATTTTCTGGCTCCCAAGATGACTCATCAAGTGGAAATGCTGGGAAATCAGCTTTTGCCCGCATTACAAGTAATTTGGGAATGCGATTGTCTCCAAAATCTCCTGTGGCAGATGACAATTCCAATGAACTAGCAGCACAATCTAATCTGTTTGGAACTATCACAAAAGGCCTCGTTGACTCTTCAAAGAATGCGGTGAAAGCTGTGCAGGTTAAAGCTCGACATGTTGTTTCTCAAAATAAACGCAGATACCAGGAAGGTGGTTTTGATTTAGATATGACATATATCACAGAAAACATTATTGCAATGGGGTTCCCTGCTGGTGATATGAGCTCTGGTTTTTTTGGTTATGTTGAAGGATTTTATAGAAATCATATGGAAGAAGTGATTCAATTTTTTGAGACTCACCATAAGAATAAATACAAAGTATATAATCTTTGTTTGGAGCGGCTGTATGATGCATCATTGTTTGAGGGGAAGGTGGCTAGCTTCCCATTTGATGACCATAATTGTCCACCAATTCAACTGATCATATCATTTTGTCAAAGTGCTTACTCATGGTTGAAAGAAGACATTGAGAATGTGGTGGTTGTCCACTGTAAGGCTGGAATGGCCAGGACGGGGTTGATGATTTCCAGTCTTCTACTATTCTTAAAGTTCTTCCCAACTGCTGAGGAGTCGATGGATTACTATAATCAGAAAAGATGTGTTGATGGAAAAGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAGTATTTTGAGCGGATCTTGACTTACTTTAATGGTGAATGCCCACCTCCCCGCAGGTGCATGCTTAGGGGATTCCGGCTTCACAGATGTCCTTACTGGATCAGGCCCTCTATAACCGTCTCAGATCATAGTGGTGTGCTGTTCTCAACCAAAAAGCATCCAAGGACCAAGGATCTTTTGTCAGAAGATTTTTGGTTTGCTGCCCCAAAGAAGGGAGTGATGGTCTTTGCTTTGCCGGGAGAACCTGGTCTCACAGAGTTGGCAGGGGACTTCAAAATCCATTTTCATGATCGTCAAGGAGATTTTTACTGTTGGTTGAACACAACTATGACAGAAAACAGGAAAATTTTAAATACCAGTGATCTTGATGGCTTTGACAAGAGAAAATTGCCTTCTCCAGGGTTCCAGGTTGAGGTTGTGCTGGTGGATCATAATGGCGATGTTGTAACTTCCAAACATGAAGTCACAAAGAAATCAGATGAGAGTTCGAGTGCCAGTCCTGCCCCAGTTGAGGCGAGCACCCCCGCACCAAATGCAGACAAAGAGTCGGGGGATGGAGATCATGACAAAGATGATGTATTTTCTGATGGTGAGGCCGAGCATCCTGCTTCTTCAAGAAGCAAGCAAACAAAAGCACCTTCTGAAGCAGTTGACACAGTTGCAAGTAACACCAAAGAGTCTGAGGCAAACAAAATATCAAATCAAATAACAAATATAACGCATGCAACAGAACAAGTTTCTTTGGGTAGCAAGATCTCTATGCCAAGTCATAGTACTGGCGAGCCAAAAAGTGATACGGGTGGAAGAACAGCGTCCAGTCTTGATGTGCCCAGCTCAGAAAGTGAGTTTAAGGCCATGGCTGCAGATGCTTCTGTGTTTACATTCGGAGATGATGAAGATTACGAAAGTGATTGA 1866 0.4271 MDQVPEADVSKPPPVKVPSMTPPSKEDDGQTSASIASGQDNSAREAPSKLSPTGISSWAKNLKISQPFSGSQDDSSSGNAGKSAFARITSNLGMRLSPKSPVADDNSNELAAQSNLFGTITKGLVDSSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIQFFETHHKNKYKVYNLCLERLYDASLFEGKVASFPFDDHNCPPIQLIISFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCVDGKGLVLPSQIRYVKYFERILTYFNGECPPPRRCMLRGFRLHRCPYWIRPSITVSDHSGVLFSTKKHPRTKDLLSEDFWFAAPKKGVMVFALPGEPGLTELAGDFKIHFHDRQGDFYCWLNTTMTENRKILNTSDLDGFDKRKLPSPGFQVEVVLVDHNGDVVTSKHEVTKKSDESSSASPAPVEASTPAPNADKESGDGDHDKDDVFSDGEAEHPASSRSKQTKAPSEAVDTVASNTKESEANKISNQITNITHATEQVSLGSKISMPSHSTGEPKSDTGGRTASSLDVPSSESEFKAMAADASVFTFGDDEDYESD* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4100 621 MobiDBLite consensus disorder prediction 523 596 - -
Mtr1g4100 621 MobiDBLite consensus disorder prediction 24 55 - -
Mtr1g4100 621 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 22 621 - -
Mtr1g4100 621 SMART PTEN_C2_2 332 460 IPR014020 -
Mtr1g4100 621 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 241 301 IPR000387 GO:0016311|GO:0016791
Mtr1g4100 621 ProSiteProfiles Phosphatase tensin-type domain profile. 148 327 IPR029023 -
Mtr1g4100 621 MobiDBLite consensus disorder prediction 468 599 - -
Mtr1g4100 621 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 22 621 - -
Mtr1g4100 621 ProSitePatterns Tyrosine specific protein phosphatases active site. 264 274 IPR016130 GO:0016311|GO:0016791
Mtr1g4100 621 MobiDBLite consensus disorder prediction 1 55 - -
Mtr1g4100 621 MobiDBLite consensus disorder prediction 498 522 - -
Mtr1g4100 621 ProSiteProfiles C2 tensin-type domain profile. 334 461 IPR014020 -
Mtr1g4100 621 Gene3D Protein tyrosine phosphatase superfamily 133 330 IPR029021 -
Mtr1g4100 621 CDD PTP_PTEN 158 323 IPR045101 GO:0016791
Mtr1g4100 621 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 161 329 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4100 Mtr-Chr1 52544645 52551454 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4100 37 621 Protein tyrosine phosphatase (PTP) family AT3G19420 70.234 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4100 K01110 - gmx:100784003 1058.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4100 1 52544645 52551454 Mtr1g4100 1 52544645 52551454 ECH
Mtr5g0613 5 5948875 5955281 Mtr1g4100 1 52544645 52551454 PCT