Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4099 ATGGCTATCCATCATCATCACCAACAACACACTTCTTCTCTTTTTGATGCTCTTTACTGTCATGAAGAAAAATGGGAAGACGATGATAATGATGATGAAGGAGAAGTTGTTGATGAAGAAGGAGAACAAAGTTATGTCACAACAACAAACAATGATATATTGGACTCTACTTCCCTTTTACCTCTGCTTTTATTAGAACAGAACTTGTTCAATAAAGATGAAGAACTCAACACTCTTTTCTCCAAAGAAAAGATTCAACAAGAAACTTATTATGACGATCTGAAAAATGTGATGAACTTTGACTCACTCACTCAACCTCGTCGTGAAGCTGTTGAATGGATGCTTAAAGTCAATGCTCATTATGGTTTCTCTGCTCTCACTGCAACACTTGCTGTTAATTATCTTGATAGGTTTCTTCTAAGCTTCCATTTTCAAAAGGAGAAGCCATGGATGATTCAGCTTGTTGCTGTTACTTGCATCTCTTTAGCTGCTAAAGTTGAAGAAACTCAAGTTCCTCTTCTCTTAGACCTTCAAGTGCAAGATACTAAATATGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTTTTGATTCTGTCAACACTGAAATGGAAGATGCATCCAGTGACAACACACTCTTTTTTAGATCACATTATAAGAAGGCTTGGATTGAAAACTAATCTTCATTGGGAGTTTCTTAGGCGCTGTGAGAATCTTCTTCTATCTGTACTTTTAGATTCAAGATTTGTTGGTTGTGTTCCTTCTGTGTTGGCCACTGCTACAATGTTGCATGTTATAGACCAGATTGAACAGAGTGATGATAATGATGTGGATTACAAAAATCAGCTTCTTAATGTTCTCAAAATCAGCAAGGAGAAAGTTGATGAATGTTATAATGCGATTCTTCATCTTACAAATACAAATAATTATGGTTATAATAAACGAAAGTATGAAGAAATCCCTGGTAGTCCAAGTGGCGTAATTGATGCTGTTTTTAGTTCTGATGGTTCTAACGATTCGTGGACAGTGGGAGCATCATCATATTCAACCTCAGAGCCTGTGTTTAAGAAGACCAAGAATCAAGGACAAAATATGAATTTGTCACCGATTAACAGGGTCATTGTCGGAATTCTTGCCACTGCAACCTCTCCTTAA 1155 0.3671 MAIHHHHQQHTSSLFDALYCHEEKWEDDDNDDEGEVVDEEGEQSYVTTTNNDILDSTSLLPLLLLEQNLFNKDEELNTLFSKEKIQQETYYDDLKNVMNFDSLTQPRREAVEWMLKVNAHYGFSALTATLAVNYLDRFLLSFHFQKEKPWMIQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELLILSTLKWKMHPVTTHSFLDHIIRRLGLKTNLHWEFLRRCENLLLSVLLDSRFVGCVPSVLATATMLHVIDQIEQSDDNDVDYKNQLLNVLKISKEKVDECYNAILHLTNTNNYGYNKRKYEEIPGSPSGVIDAVFSSDGSNDSWTVGASSYSTSEPVFKKTKNQGQNMNLSPINRVIVGILATATSP* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4099 384 SUPERFAMILY Cyclin-like 73 207 IPR036915 -
Mtr1g4099 384 SMART cyclin_7 112 200 IPR013763 -
Mtr1g4099 384 Pfam Cyclin, C-terminal domain 209 317 IPR004367 -
Mtr1g4099 384 ProSitePatterns Cyclins signature. 107 138 IPR006671 -
Mtr1g4099 384 Gene3D - 100 207 - -
Mtr1g4099 384 PANTHER CYCLINS 48 357 IPR039361 -
Mtr1g4099 384 Gene3D - 208 301 - -
Mtr1g4099 384 CDD CYCLIN 107 199 IPR013763 -
Mtr1g4099 384 Pfam Cyclin, N-terminal domain 91 206 IPR006671 -
Mtr1g4099 384 SMART Cyclin_C_2 209 335 IPR004367 -
Mtr1g4099 384 PANTHER CYCLIN D3.1 PROTEIN 48 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4099 Mtr-Chr1 52534539 52536835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4099 1 304 Core Cell Cycle Gene Families AT4G34160 55.844 7.69e-109 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4099 K14505 - gmx:547740 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4099 1 52534539 52536835 Mtr1g4099 1 52534539 52536835 ECH
Mtr3g3672 3 50603150 50604925 Mtr1g4099 1 52534539 52536835 ECH