Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4064 ATGGAAACCAAAGATGAACTTCAAGTAATGGACCATTTGACCATACCAACAACAACATCTGGGACCAGTTTCTCTCAGTTACTATTAGGTGATGATGATAATGATCATAATCCATTAGGTCTTGATGTGGACCAAACTTTTTCCACCTCTCTTTTCTCTCTTCACAACACACCCAAAATGCTTTGTTTTGGTGACTATCAAAATGAAATTCATGAAACAACCACCAACTTAATATTAACTCCTCAGAAATCTATTATCACTTCAAGTGATTCTTCTTCTGCTTCTTCATGCAACCACCAAACCAACACTGGTTTCAATTCTTTGACAACAACTAAATCCAATAGTTTGCAGAAAAAGCGGAATGGGTCAGGAGGACAAGAACTTGGGACAAAGGCAGGTGTTGGAGGGCAGAAAGGTCCTAAAAAGACCAAAGGAGACAACCCCACCTCAACTGGACATGCAAAGCCGAAAAAAGAGAAGCTAGGTGAACGAATTGCAGCGTTACAACAACTTGTTTCACCCTTTGGCAAGACTGATACAGCTTCGGTGCTTCACGAGGCTACTGGTTACATAAGATTCTTACATGATCAAGTTCAGGTTCTGTGCTCTCCATACTTGCAACCTTCACAAGTTCAATTTCAAAATCACCCTGGGGACGGAGATAACAATGTCAATATCAATGTCAATGAAATTGAAGAGATAGGAGAAGAAGTGAAGAATGATTTGAGGAGCAGAGGTTTGTGTTTGATCCCTGTTGGATGCACCTTACACGTGGCAAGTAGTAACGGTGCTGATTTTTGGTCACCTGCTTCAATAGGGAACAATGTTTCATCTTCAACTATTACTACTAAGCAGTAA 858 0.4033 METKDELQVMDHLTIPTTTSGTSFSQLLLGDDDNDHNPLGLDVDQTFSTSLFSLHNTPKMLCFGDYQNEIHETTTNLILTPQKSIITSSDSSSASSCNHQTNTGFNSLTTTKSNSLQKKRNGSGGQELGTKAGVGGQKGPKKTKGDNPTSTGHAKPKKEKLGERIAALQQLVSPFGKTDTASVLHEATGYIRFLHDQVQVLCSPYLQPSQVQFQNHPGDGDNNVNINVNEIEEIGEEVKNDLRSRGLCLIPVGCTLHVASSNGADFWSPASIGNNVSSSTITTKQ* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4064 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 194 IPR011598 GO:0046983
Mtr1g4064 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 212 IPR036638 GO:0046983
Mtr1g4064 285 CDD bHLH_AtbHLH_like 157 201 IPR045239 -
Mtr1g4064 285 PANTHER BASIC HELIX-LOOP-HELIX (BHLH) DNA-BINDING SUPERFAMILY PROTEIN-RELATED 54 262 - -
Mtr1g4064 285 MobiDBLite consensus disorder prediction 88 159 - -
Mtr1g4064 285 MobiDBLite consensus disorder prediction 88 124 - -
Mtr1g4064 285 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 54 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4064 Mtr-Chr1 52200250 52202930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4064 154 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 48.092 6.34e-32 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4064 - - mtr:MTR_1g107185 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4064 1 52200250 52202930 Mtr1g4064 1 52200250 52202930 ECH