Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4060 ATGATGATTGAGGGAGATCAAACAAGTCTTACAACAGCAACCAAGGAACAACCAGGCGAAGTGATTGACAGAGATAAGAACATCGATGATGGAAGCGAAGATGACAGCCCCAAAGAGTGGTTAAACCTGAGCTTAGGAGGCACTTCACTCTCAACAGCTGGAGACCCTGATTCACAATCAAGACCAACCAAAGTTTTTTCATGCAATTTTTGCTTGAGAAAGTTCTTTAGTTCACAGGCATTAGGAGGTCATCAGAACGCTCACAAAAGGGAACGAGGTGCAGCAAGAAGATATCAATCTCAGAGTCAGAGGACGATGGCACTAATGGGCCTGTCCGTGAACAATCCAATGCTTCGATCACTTGGTGTCCAAGCCCATTCACTAGTGCACAAGCCATGCAGAAGTGGAACTATGGTGGCGCCAAGCTTTCAAGAAGCATATGCAGCAGGGCTCGGAATGGCAGGTACACCTTTCATGTCTGAGGATCATACTAATCAGGTGTGGCCAGGCAGCTTCCGTATGGTTCCACAACAGCCCCAGCCACCACAGGAGACACTAAAGCTTGATTTAGACCTCAGACTCTGA 585 0.4735 MMIEGDQTSLTTATKEQPGEVIDRDKNIDDGSEDDSPKEWLNLSLGGTSLSTAGDPDSQSRPTKVFSCNFCLRKFFSSQALGGHQNAHKRERGAARRYQSQSQRTMALMGLSVNNPMLRSLGVQAHSLVHKPCRSGTMVAPSFQEAYAAGLGMAGTPFMSEDHTNQVWPGSFRMVPQQPQPPQETLKLDLDLRL* 195
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4060 194 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Mtr1g4060 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Mtr1g4060 194 PANTHER ZINC FINGER PROTEIN 4-LIKE 10 194 - -
Mtr1g4060 194 MobiDBLite consensus disorder prediction 1 16 - -
Mtr1g4060 194 Gene3D Classic Zinc Finger 50 113 - -
Mtr1g4060 194 MobiDBLite consensus disorder prediction 18 37 - -
Mtr1g4060 194 MobiDBLite consensus disorder prediction 1 44 - -
Mtr1g4060 194 PANTHER ZINC FINGER PROTEIN 4-LIKE 10 194 - -
Mtr1g4060 194 SUPERFAMILY beta-beta-alpha zinc fingers 63 92 IPR036236 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mtr1g4060 Mtr-Chr1 52148638 52150274 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4060 13 182 C2H2 Transcription Factor Family AT1G24625 35.593 7.54e-20 81.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4060 - - ahf:112779836 255.373
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4060 1 52148638 52150274 Mtr1g4060 1 52148638 52150274 ECH