Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4058 ATGATTAGTTCAACTGGAAAGTCAACAAGTCCTAACGATTTTACGACTGAGAAGATAGGAACTGAACAACGTGACATGTCTGAAAAAACAACTCAGGTTGGCTCTGAATGTTTAGACAAAGAACAAAGTGTGCTTGGTACTGTAGTAACCGATTCTGTTATCGATGAAAAATCAAATAATATTTCGGTGAATATGACTGAGAATTCTGTTATTCAACTGCCTGGAGAAATGAGAGATGCAGTAACTACCCTTGTTGAAGAACAACCACAACCCGTTCCTGTTCAAGTGAAATCAAATTCTGTGAATGAGCTATTGGATCCACCTTCTGGAGATGTTGCGAAAAATATTAGTTCTCAAAACGAACCTGGTGAAACTAGTGATGCAGTTACTGGCCTTGTTGAAGACCAAACACAATCTGTTCCTGCTCAAGTGAAAACAGAATCTTCTGGAGACGCTGCGAAGAATAATAGTTCTGATTGTTCAGAAAGAAAGTCTAAAAACTTGGGTCAAATGCGAGTGAAACATGGGGCAATAAAAAACTCAAAATTATCGAAGAAGTATGTATTAAGGTCGTTAGGAAGCAGCGACAGAGCTCTGCGGTCGAGGACAAAAGATGACAAACCTAAAGATCCTGAACCTATTAATACTGTTACTGATGTTAATAATGATGAAATCAAGACAAAAGAAAGGAGGAAGAAGAAGAAGAAAAAGACAAGAAAAGAGGGAATTAATGATCAATTTTCTAAAATCAGAGCTCAACTGAGATATTACTTGAACCGAATAAGCTACGAGCAAAACTTGATTGATGCTTATTCTGGTGAGGGCTGGAAAGGATCCAGTATGGAAAAATTAAAGCCAGAGAAGGAGATTCAACGGGCCAAGTCCGAAATTCTGCGACGCAAATTAAAAATCAGGGATCTATTTCAAAATTTGGATTCATTGTGTGCTGAAGGAAGGCTTCCTGAATCTTTGTTTGATTCTGAGGGAGAGATTGATAGTGAGGATATATTCTGTGCAAAATGCCAGACCAAAGTGTTGGGTACTAATAATGATATAATTCTCTGTGATGGTGCTTGTGACCGTGGGTATCACCAGCTCTGTTTGGATCCTCCATTGTTAACTGAAGACATTCCACCTGGCGACGAGGGTTGGTTATGCCCAGGATGTGATTGCAAAGATGACTGCATTGAACTTGTTAACGACTTGTTAGGGACAAGTCTCTCTCTTACTGATTCCTGGGAGAGGGTTTTTCCTGAAGCAGCTACAGCTGCTGGAAGTATCTTGGATCACAACCTGGGACTTCCTTCAGATGATTCTGACGATGATGATTATAATCCTGATGGTCCAGAGGATGTGAAGGTTGAAGGCGGCAAATCAAGTTCTGACGAATCTGAGTATGCATCTGCTTCTGAGAAATTCGAGGATCCAGGCCATGAGGATCAATACATGGGTCTTCCTTCTGAAGATTCAGAGGATGATGATTTTGATCCCGATGCTCCCAATCCTGGTGCTAAAGACATTGAAGAAAGTTCAAGTTCCGATTTCACATCTGATTCTGAGGATCTTGCTGCTACAATTAAGGATAACATGTCCACCGGACAAGATGATGTCACATCTGCACCGTTGGATGATGTTAAGAACTTCAAAGGTTCTAGTAAACAAAACCGTAAGAAGCCATCTATAACCGATGAACTGTCATCTTTAGCAGAGCCAGATCTCGGTGAAGAAGATTTGACTCCGGTTTCTGGGAAAAGAAATGTTGAAAGGCTGGACTACCAAAAGCTGTATGAAGAGACATACCATAGTGATACTAGTGATGATGAAGATTGGGCCGACACTACTACTCCAAGTAGAAAAAAGAAACTCACCGCCAAAATAACTCCAGGGTCACCAAATGGAAATGCCTCAAATAATTCCCGCCGTACTGCCAAGAGGAACACCCATCAGCATAAAGTTGAAAATACAAATAATTCACCCACCAAAACACTTGAAGGATGCACGGAATCTGGTAAAAAACGTGGATCTTCATACTGTAAACTTGGAGAAGCTGTTGTTCAGAGACTTCACAAATCTTTCAAAGAAAATCAATATCCAGAACGAACCGCAAAAGAAAGCTTGGCGCAAGAACTGGGACTCACTTTTCAACAGGTTGACAAATGGTTTGGCAATTCTCGTTGGAGGTTCCGACATTCATCATGTAAGGAGGCCAGTCCAGGTAGTAATGCTTCACAGCAGGCCAATGACAGTGGAGCTAAAAATAAAGGAGATAATGCTTCGCAGCAGGCCAGTGAAAGCGGAGCTGAAAATAAAGGAGATAGGGGTAATGCTTCGCAGCAAGCCACTGACAGCGGAGGTGAAAACAAAAGAGAGACGGAGCATCAACTAGTTTCCCAGGAGACTAGTGGAGAAAAATCGAAAACCCCAAGCTCGAAGAAAAGGAAGCGTTTGTCTGAGCCGCAGACATCTGAAGCAGGGCTGGTCCGTAACGGCTCAACCTTTGATTGCTTACCGGTAGCTGGCACAAGCAATAAAATGAAGAAAAAGAAGGGGAAATGA 2556 0.4167 MISSTGKSTSPNDFTTEKIGTEQRDMSEKTTQVGSECLDKEQSVLGTVVTDSVIDEKSNNISVNMTENSVIQLPGEMRDAVTTLVEEQPQPVPVQVKSNSVNELLDPPSGDVAKNISSQNEPGETSDAVTGLVEDQTQSVPAQVKTESSGDAAKNNSSDCSERKSKNLGQMRVKHGAIKNSKLSKKYVLRSLGSSDRALRSRTKDDKPKDPEPINTVTDVNNDEIKTKERRKKKKKKTRKEGINDQFSKIRAQLRYYLNRISYEQNLIDAYSGEGWKGSSMEKLKPEKEIQRAKSEILRRKLKIRDLFQNLDSLCAEGRLPESLFDSEGEIDSEDIFCAKCQTKVLGTNNDIILCDGACDRGYHQLCLDPPLLTEDIPPGDEGWLCPGCDCKDDCIELVNDLLGTSLSLTDSWERVFPEAATAAGSILDHNLGLPSDDSDDDDYNPDGPEDVKVEGGKSSSDESEYASASEKFEDPGHEDQYMGLPSEDSEDDDFDPDAPNPGAKDIEESSSSDFTSDSEDLAATIKDNMSTGQDDVTSAPLDDVKNFKGSSKQNRKKPSITDELSSLAEPDLGEEDLTPVSGKRNVERLDYQKLYEETYHSDTSDDEDWADTTTPSRKKKLTAKITPGSPNGNASNNSRRTAKRNTHQHKVENTNNSPTKTLEGCTESGKKRGSSYCKLGEAVVQRLHKSFKENQYPERTAKESLAQELGLTFQQVDKWFGNSRWRFRHSSCKEASPGSNASQQANDSGAKNKGDNASQQASESGAENKGDRGNASQQATDSGGENKRETEHQLVSQETSGEKSKTPSSKKRKRLSEPQTSEAGLVRNGSTFDCLPVAGTSNKMKKKKGK* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4058 851 SUPERFAMILY Homeodomain-like 679 739 IPR009057 -
Mtr1g4058 851 CDD PHD_PRHA_like 337 389 IPR045876 -
Mtr1g4058 851 Pfam Homeodomain 684 730 IPR001356 GO:0003677
Mtr1g4058 851 MobiDBLite consensus disorder prediction 428 674 - -
Mtr1g4058 851 MobiDBLite consensus disorder prediction 785 799 - -
Mtr1g4058 851 MobiDBLite consensus disorder prediction 734 784 - -
Mtr1g4058 851 SMART PHD_3 337 390 IPR001965 -
Mtr1g4058 851 MobiDBLite consensus disorder prediction 87 180 - -
Mtr1g4058 851 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 130 815 - -
Mtr1g4058 851 MobiDBLite consensus disorder prediction 627 642 - -
Mtr1g4058 851 MobiDBLite consensus disorder prediction 449 485 - -
Mtr1g4058 851 Pfam PHD-finger 337 392 IPR019787 -
Mtr1g4058 851 MobiDBLite consensus disorder prediction 88 105 - -
Mtr1g4058 851 MobiDBLite consensus disorder prediction 1 17 - -
Mtr1g4058 851 MobiDBLite consensus disorder prediction 577 619 - -
Mtr1g4058 851 MobiDBLite consensus disorder prediction 1 35 - -
Mtr1g4058 851 MobiDBLite consensus disorder prediction 197 213 - -
Mtr1g4058 851 ProSiteProfiles Zinc finger PHD-type profile. 335 392 IPR019787 -
Mtr1g4058 851 CDD homeodomain 685 732 IPR001356 GO:0003677
Mtr1g4058 851 SUPERFAMILY FYVE/PHD zinc finger 327 395 IPR011011 -
Mtr1g4058 851 MobiDBLite consensus disorder prediction 194 220 - -
Mtr1g4058 851 MobiDBLite consensus disorder prediction 112 156 - -
Mtr1g4058 851 MobiDBLite consensus disorder prediction 731 851 - -
Mtr1g4058 851 ProSitePatterns Zinc finger PHD-type signature. 338 389 IPR019786 -
Mtr1g4058 851 MobiDBLite consensus disorder prediction 506 538 - -
Mtr1g4058 851 SMART HOX_1 673 735 IPR001356 GO:0003677
Mtr1g4058 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 400 IPR013083 -
Mtr1g4058 851 ProSiteProfiles 'Homeobox' domain profile. 671 731 IPR001356 GO:0003677
Mtr1g4058 851 PANTHER HOMEOBOX PROTEIN HAT3.1 130 815 - -
Mtr1g4058 851 Gene3D - 675 743 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4058 Mtr-Chr1 52135669 52142544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4058 231 726 Homeobox Transcription Factor Family AT3G19510 47.458 2.41e-129 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Mtr1g4058 PHD 3.8e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4058 - - cam:101500744 1092.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4058 1 52135669 52142544 Mtr1g4058 1 52135669 52142544 ECH