Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4042 ATGATGAAGTGGCCGCAGCCCGGCTACAATTGGATTCCTACTAGTTCATCAAAATGGAATGGCAGTAGTGCAGTGAGTGGAAGTATGGGTGACTCTGTCAATGAAGAGCATCACACAAGTGGTGCACTGGTTGCTTCTCCTAAGAGGGGCATAGCTTTCTTTGAAGGGGACACGGATTTTGAGCCACCTAATGGCATTGAATTTGAAACTCATGAAGCAGCATATTCATTTTATCAAGAGTATGCCAAATCTATGGGATTCACCACTTCCATTAAAAACAGCAGACGATCAAAGAAGACCAAAGAATTTATTGATGCCAAATTTGCATGCTCTAGGTATGGAGTAACACCTGAGTCTGATGGTAGGAGCAGTCGAAGATCAAGTGTAAAGAAGACAGATTGCAAAGCTTGCATGCACGTAAAAAGAAACCCAGATGGGAAATGGAACATTTTTGAATTTATAAAGGATCACAATCATGAACTTTTACCAGCTTTGGCATATCATTTTCGGATTCATGGAAACGTGAAGTTGGCTGACAAGAATAATATTGATATCTTGCATGCTGTTAGTGAACGCACCCGAAAGATGTATGTTGAAATGTCTAGACAATCTGGTGGCTGTCAAAACATTGGGTCAATCATGGGTGATACGAGTTATCAGTTTGACAGAGGGCAGTATCTGGCTTTGGATGAGGGAGATGGGCAAGTTATGGTGGAGTATTTCAAGCATATTCAAAAGGAGGATCCCAACTTCTTCTATTCTATAGATTTAAACGAGGAACAACGTTTAAGAAATATATTTTGGGTTGATTCAAAAAGCATTGATGATTATCTCAGCTTTAATGATGCAGTTTCATTTGATACTTCCTACATAAAAAGCAATGATAAGTTGCCTTTTGCTCCTTTTGTTGGAGTGAACCATCACTCCCAACCTATATTGCTTGGATGTGCATTGGTTGCTGATGAGACTAAGCCAACTTTTGTTTGGTTACTGAAGACATGGCTTAGAGCGATGGGAGGGCAAGCTCCCAAAGTTATAGTCACTGATCAAGACAAAGCCTTGAAGGAAGCAATTGAAGAAGTCTTCCCAAGTGTACGTCATTGCTTTTCTCTTTCGCACATAATGGAAAAGATACCTGAAAATCTGTCTTTTGTGATCAAACAGTATAAGAACTTCTTGCCAAAGTTTAAGAATTGCATTTTTAAGTCTTGGACAGATGAACAGTTTGACATGAGATGGTGGGAAATAGTGACTATATTTGAACTCCATGATGATGTTTGGTTTCACTCATTGTACGAAGACCGGAAAAAGTGGGTACCGACATACATGGGAGATGTCTTTTTAGCTGGAACGTCCACAGCTCAACGTTCCGAAAGTATGAACTCTTTCTTTGACAAATACATTCATAAGAAAATCACCCTTAAAGAGTTTGTGAAACAGTATAGGTTAATTCTTCTGAATAGGTATGATGAGGAAGAAATTGCAGATTTTGATACATTGCACAAACAGCCTGCACTTAAATCTCCTTCACCTTGGGAAAAACAAATGTCAACAATTTATACACATGCAATATTTAAGAAATTCCAAGTTGAAGTGTTGGGTGTAGCTGGATGTCAATCTAGGATAGAGGTTGGAGATGGAACTGCTGTGAGATATATAGTTCAAGATTATGAGAAGGATGAAGAGTTTTTGGTAACTTGGAAAGAGTTGAGCTCAGAGGTCTCTTGCTTCTGTCGATTGTTCGAATATAAAGGTTTCCTTTGCAGGCATGCATTGAGTGTTCTCCAACGCTGCGGTTGTTCAAGTGTTCCATCTCATTATATCATGAAGAGATGGACCAAAGATGCCAAAATTAGGGAACCCGCAGCAGATAGGACACAAAGGATACAAACTAGGCCTCAACGTTATAATGATTTGTGCAAACGGAGTATTGCGTTGAGTGAAGAAGGATCATCATCCGAAGAGAGTTATAATATTGCTTTGCGCGCGCTTATTGATGCTTTGAAGAACTGTGTACTTGTAAATAACTCTAACGACAATGGTGCAGAAACTGGCAACAATGGTTACAGTCTTCGCGAAGCAGAAGAATATCAGAGTACCCTTGCTTCAAAACCAAGTAAGAAGAGGAACACAACTAGGAAAAGAAAGGTGCAACGAGAGCAGAGTCCTGTGCTTGTCGATGCTCAAGATACCCTTCAGCAAATGGATAATCTTAGCTCGGATGCAATTGCCCTTAATGGATATTATGGTACTCAGCAGAATGTGCAAGGACTGCATGTACAGTTGAACTTAATGGAGCCACCTCATGATGGTTACTATGTTAATCAACACAGCATGCAAGGCCTGGGTCCATTGAATTCTATGGCTCCGAGCCATGATGGGTATTTTGGAACACAACAAAGCATTCATGGGATGGGAGGGCAATTGGAGTATCGTCCGACAACCACTTTTGGATATAGCCTTCAGGATGAGCCTGATCCTGATCCACACTTTCACAGCAACAGTTCAAGAAATACTTAG 2520 0.4036 MMKWPQPGYNWIPTSSSKWNGSSAVSGSMGDSVNEEHHTSGALVASPKRGIAFFEGDTDFEPPNGIEFETHEAAYSFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDGRSSRRSSVKKTDCKACMHVKRNPDGKWNIFEFIKDHNHELLPALAYHFRIHGNVKLADKNNIDILHAVSERTRKMYVEMSRQSGGCQNIGSIMGDTSYQFDRGQYLALDEGDGQVMVEYFKHIQKEDPNFFYSIDLNEEQRLRNIFWVDSKSIDDYLSFNDAVSFDTSYIKSNDKLPFAPFVGVNHHSQPILLGCALVADETKPTFVWLLKTWLRAMGGQAPKVIVTDQDKALKEAIEEVFPSVRHCFSLSHIMEKIPENLSFVIKQYKNFLPKFKNCIFKSWTDEQFDMRWWEIVTIFELHDDVWFHSLYEDRKKWVPTYMGDVFLAGTSTAQRSESMNSFFDKYIHKKITLKEFVKQYRLILLNRYDEEEIADFDTLHKQPALKSPSPWEKQMSTIYTHAIFKKFQVEVLGVAGCQSRIEVGDGTAVRYIVQDYEKDEEFLVTWKELSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPSHYIMKRWTKDAKIREPAADRTQRIQTRPQRYNDLCKRSIALSEEGSSSEESYNIALRALIDALKNCVLVNNSNDNGAETGNNGYSLREAEEYQSTLASKPSKKRNTTRKRKVQREQSPVLVDAQDTLQQMDNLSSDAIALNGYYGTQQNVQGLHVQLNLMEPPHDGYYVNQHSMQGLGPLNSMAPSHDGYFGTQQSIHGMGGQLEYRPTTTFGYSLQDEPDPDPHFHSNSSRNT* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4042 839 MobiDBLite consensus disorder prediction 18 40 - -
Mtr1g4042 839 Pfam SWIM zinc finger 569 598 IPR007527 GO:0008270
Mtr1g4042 839 MobiDBLite consensus disorder prediction 18 35 - -
Mtr1g4042 839 ProSiteProfiles Zinc finger SWIM-type profile. 563 599 IPR007527 GO:0008270
Mtr1g4042 839 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 33 751 IPR031052 GO:0006355
Mtr1g4042 839 SMART 26again6 574 601 IPR006564 GO:0008270
Mtr1g4042 839 Pfam FAR1 DNA-binding domain 76 163 IPR004330 -
Mtr1g4042 839 Pfam MULE transposase domain 284 376 IPR018289 -
Mtr1g4042 839 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 33 751 - -
Mtr1g4042 839 MobiDBLite consensus disorder prediction 817 839 - -
Mtr1g4042 839 MobiDBLite consensus disorder prediction 696 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4042 Mtr-Chr1 52016386 52020802 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr1g4042 MULE 4.8e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4042 - - gmx:100805377 1419.45