Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4035 ATGAGTTGCAACGGTTGCCGAGTTTTGAGAAAGGGATGCAGTGAGGATTGCATGTTACGAGATTGTCTAACGTGGATACAAAATCCACAAGCACAGGCTAACGCCACTGTCTTTGTCACCAAGTTCTTTGGCCGTGCCACCCTCATGTCTTTCCTTTCACCTGTTCATCCCAACCAAAGATCATGTTTGTTCCAGTCGCTTATGTATGAAGCTGTTGGGAGAACTATAAATCCAGTAAATGGAGCAGTTGGGCTGTTATGGACTGGAAAGTGGCAATTCTGTCAACTTGGTGTTGAACAAGTGCTGAGAGGTAACGGCGGCGCGTTGACGGCACTCCCTGATCAGTTGTTAGGTGTGGATCATGATAGTAGTTCAATTCATCATCAATATCACCAACAGCAATCTGGGTTGATGTCATACTCTAGAGTGGTGAAAAACCAAGCAGAAAAGCAACGTGCGGGGACACATGAGTCAGAGGAATCGGAGTCTTCCACGTTGGGAAGTAGAACAAGAACAGAAGATTGTTCTTATGTTTATGCTAATTCTCAAACTCAAAGGAACCAACTCCTTACACTATTCTTATGA 585 0.4444 MSCNGCRVLRKGCSEDCMLRDCLTWIQNPQAQANATVFVTKFFGRATLMSFLSPVHPNQRSCLFQSLMYEAVGRTINPVNGAVGLLWTGKWQFCQLGVEQVLRGNGGALTALPDQLLGVDHDSSSIHHQYHQQQSGLMSYSRVVKNQAEKQRAGTHESEESESSTLGSRTRTEDCSYVYANSQTQRNQLLTLFL* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4035 194 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Mtr1g4035 194 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 194 - -
Mtr1g4035 194 MobiDBLite consensus disorder prediction 148 169 - -
Mtr1g4035 194 PANTHER LOB DOMAIN PROTEIN 1 194 - -
Mtr1g4035 194 MobiDBLite consensus disorder prediction 149 167 - -
Mtr1g4035 194 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4035 Mtr-Chr1 51964287 51965218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4035 1 118 AS2 family AT3G49940 67.797 2.17e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr1g4035 LOB 4.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4035 - - mtr:MTR_1g106420 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4035 1 51964287 51965218 Mtr1g4035 1 51964287 51965218 ECH
Mtr5g0579 5 5594773 5596115 Mtr1g4035 1 51964287 51965218 PCT