Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4028 TCTACAAAAGTTTGTTGGTCTAAATTTGAGGAAAGGGGTTTGTATTTGATCCGTTTGTCAATCACTTGTGCAAACCATGTAGCTTATGGTAGTCTTGAAAATGCAAACACAACACTTGAACAGATTTCTCAGCTTGCAATTCCTGATGAAGACACTATGCAGAGAATTGCTGCATATTTCACTGAAGCACTTACTGATAGGATACATAAAACTTGGCCTGGACTCCATAGAGGCTTAAATTCCACAAGAATTATTATGCTTTCTGAAGAAATTATGGTTCAGAAGTTTTTCTTTGAACTTTTCCCTTACTTGAAGGTAGCATATATTTTGACAGATCAAGCTATTGTTGAATCTATGGAAGGTGAGAAAATGGTTCATATAATTGAGATCCTATTCTGCAGTTACATTCCCTTTGGCCTTGGATGTCCAAGTCCCAGTTCAACATCATCATCGTCGACAGCATCTTCATCTGATTCAATGAATGTGGAGAATTTTCTCAATGCTTTATGGAGTTTATCACCAAAAGTCATGGTTGTAACGGAACAGGACTCGAATCAAAACAGTTCGACTCTGATGGAGAGACTACTTGAAGCTCTATGTTCTTATGCAGCATTATTTGATTGTTTGGAATCAACTGTATCAAGAACAATATGGTAA 657 0.3683 STKVCWSKFEERGLYLIRLSITCANHVAYGSLENANTTLEQISQLAIPDEDTMQRIAAYFTEALTDRIHKTWPGLHRGLNSTRIIMLSEEIMVQKFFFELFPYLKVAYILTDQAIVESMEGEKMVHIIEILFCSYIPFGLGCPSPSSTSSSSTASSSDSMNVENFLNALWSLSPKVMVVTEQDSNQNSSTLMERLLEALCSYAALFDCLESTVSRTIW* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4028 218 Pfam GRAS domain family 18 129 IPR005202 -
Mtr1g4028 218 Pfam GRAS domain family 158 216 IPR005202 -
Mtr1g4028 218 ProSiteProfiles GRAS family profile. 7 218 IPR005202 -
Mtr1g4028 218 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 14 131 IPR005202 -
Mtr1g4028 218 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 148 213 IPR005202 -
Mtr1g4028 218 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 148 213 - -
Mtr1g4028 218 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 14 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4028 Mtr-Chr1 51888584 51889513 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4028 163 216 GRAS Transcription Factor Family AT1G50420 75.926 3.57e-21 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Mtr1g4028 GRAS 4.8e-31 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4028 - - mtr:MTR_1g106590 356.681