Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4024 ATGGAACCTGCTCAATTGATTTCTGAAGAATGGGATTCTCTTAGTGGACAGTACACAGCTGAGGAAGCTGACTTCATGAATCAGTTCCTTAGTGGTAATAAAAATACAAGTTTTGGCATGCCATCTTACTTTCCTCATGCTGATTTTATGTGTTTCTCCCAAGGGAGTAGCACTACAAGTAGTGGAACCTACTCATGTGATTTGGCAACAAACTTTGATTCACTGTCCATGTTTTTTTGTTTGGAAGATGCCAAATTTAGTCCTCAATATTTGGATGATAGCATAAGCAAACACATAAATAATGACATTATTGATCATAAAGGGTCATGTTTAGAACCTTCTTCAGAAGAAGATAGAAGCACAAACATGGAGAACCCTGCAAAGAGATTTAGGAGCTCATTAGAGGTTTCAGAAAACACGAGGAATGTTAGAAAGTGTCCAAAATCTGCTTCTATGAGCAACAATGAAGAGGGCTTAATGTGGAATGGCACCAACAACCGTTTTTCACATGTTGACTCAATCGGAGGAATAATATCTTCAAGTTTGAGCCCAAAAGAACATGAGGCACCTAAGTTGGGCAGAAAATCAAGAGCCGCAAGTAGTCCTGCCACTGATGCACAGAGCATTTATGCAAGAAAGAGAAGAGAAAGAATAAATGAAAGATTGAGAATCTTGCAAACCCTTGTCCCAAATGGAACTAAGGTAGATATTAGCACTATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTGCAGCTTCAAATTAAGCTTTTAAGCTCTGAAGATATGTGGATGTATGCTCCAATTGCTTACAATGGAATGAACATTGGATTAGACCTCAGCTTTTCTTCTCCAACAAATTAA 864 0.3831 MEPAQLISEEWDSLSGQYTAEEADFMNQFLSGNKNTSFGMPSYFPHADFMCFSQGSSTTSSGTYSCDLATNFDSLSMFFCLEDAKFSPQYLDDSISKHINNDIIDHKGSCLEPSSEEDRSTNMENPAKRFRSSLEVSENTRNVRKCPKSASMSNNEEGLMWNGTNNRFSHVDSIGGIISSSLSPKEHEAPKLGRKSRAASSPATDAQSIYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSEDMWMYAPIAYNGMNIGLDLSFSSPTN* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4024 287 MobiDBLite consensus disorder prediction 108 125 - -
Mtr1g4024 287 MobiDBLite consensus disorder prediction 181 208 - -
Mtr1g4024 287 CDD bHLH_AtIND_like 203 265 - -
Mtr1g4024 287 PANTHER TRANSCRIPTION FACTOR BHLH85 40 284 - -
Mtr1g4024 287 MobiDBLite consensus disorder prediction 108 156 - -
Mtr1g4024 287 MobiDBLite consensus disorder prediction 126 156 - -
Mtr1g4024 287 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 251 IPR011598 GO:0046983
Mtr1g4024 287 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 269 IPR036638 GO:0046983
Mtr1g4024 287 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 40 284 - -
Mtr1g4024 287 Gene3D - 204 269 IPR036638 GO:0046983
Mtr1g4024 287 SMART finulus 208 257 IPR011598 GO:0046983
Mtr1g4024 287 Pfam Helix-loop-helix DNA-binding domain 212 252 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4024 Mtr-Chr1 51842095 51843943 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4024 10 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 37.318 5.04e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr1g4024 HLH 3.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4024 - - aprc:113871866 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4024 1 51842095 51843943 Mtr1g4024 1 51842095 51843943 ECH
Mtr5g0028 5 289818 291822 Mtr1g4024 1 51842095 51843943 PCT