Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4023 ATGGATTCTGGTGAGCAAAGTTGTGAAGAATGGAGTTCTCTTAGTGGATTTTACACAGCTGAGGAAGCTGATTTTATGGGCCAGTTACTTAATAACTTCCAAGTTTCTGAGCACCATTATGGAAATTTCAATTTAGAAATTCCATCTACATCATGGCCAGGACATGAATCCAAAATAGTGAGCATGAATAGTAGTTCACATTTTCCTCAAAATGCTGATAATAGTAACACTGATGTTTTTAGTTTTTTACAAAGTAGCTCCATTTCTGATACTAGCAATATATTTCATAATACAAATGGTGGTAACATCTGTTTGAATGATCATGTAGCCAACATTGGTTACATGAATGCCAATATTAGCACTTATAGTGTTCAAGGTAATGACAGCCAACAGATAACTGAAAACACTTCTGAAGAGTTTGGTCAAGATGTTTCGGAATCCGCGAAAGAGGCTATCAAGAACAACCTGGAAAAATCAGGAAAAAGATCTAGGAGCTCAATGAAGGTACAAAAGAACAAGAGAAATGTGAAATCTAGGAAGAAACCAAAGTCGGCGTTCAAAAGCAACGCTGACGAGGATGAAAGTCATGATCTTCAGGAGCAGAATTTGAGCTCAGAGGATGATGATTTCAATGCTTCACAGAAGCTAAATGCAGGAACATCTTCAATCTTGAACCAGAATGATTCTCCAGATTTGAAGTTAAAGGGAAAATCAAGATGTAATGGAGGATCTGCATCTGATCCACAAGGAGTCTATGCAAAAAAAAGAAGAGAAAGAATAAATGAAAGGTTGAAAATCCTACAAAGCCTGGTCCCTAATGGAACCAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTGCAATATGTGAAGTTTTTACAGGTCCAAATTAAGCTTCTGAGCTCTGATGATCACTGGATGTATGCTCCAATTGCTTACAATGGAATGAACATTGGACTAAACCTCAACATTATCCCAACCGAACTACCATAG 993 0.3776 MDSGEQSCEEWSSLSGFYTAEEADFMGQLLNNFQVSEHHYGNFNLEIPSTSWPGHESKIVSMNSSSHFPQNADNSNTDVFSFLQSSSISDTSNIFHNTNGGNICLNDHVANIGYMNANISTYSVQGNDSQQITENTSEEFGQDVSESAKEAIKNNLEKSGKRSRSSMKVQKNKRNVKSRKKPKSAFKSNADEDESHDLQEQNLSSEDDDFNASQKLNAGTSSILNQNDSPDLKLKGKSRCNGGSASDPQGVYAKKRRERINERLKILQSLVPNGTKVDISTMLEEAVQYVKFLQVQIKLLSSDDHWMYAPIAYNGMNIGLNLNIIPTELP* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4023 330 MobiDBLite consensus disorder prediction 205 231 - -
Mtr1g4023 330 SMART finulus 250 299 IPR011598 GO:0046983
Mtr1g4023 330 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 326 - -
Mtr1g4023 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 251 310 IPR036638 GO:0046983
Mtr1g4023 330 MobiDBLite consensus disorder prediction 128 142 - -
Mtr1g4023 330 MobiDBLite consensus disorder prediction 128 147 - -
Mtr1g4023 330 MobiDBLite consensus disorder prediction 154 253 - -
Mtr1g4023 330 Pfam Helix-loop-helix DNA-binding domain 254 294 IPR011598 GO:0046983
Mtr1g4023 330 PANTHER TRANSCRIPTION FACTOR BHLH54 8 326 - -
Mtr1g4023 330 Gene3D - 252 305 IPR036638 GO:0046983
Mtr1g4023 330 MobiDBLite consensus disorder prediction 184 203 - -
Mtr1g4023 330 MobiDBLite consensus disorder prediction 165 183 - -
Mtr1g4023 330 CDD bHLH_AtIND_like 245 307 - -
Mtr1g4023 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 244 293 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4023 Mtr-Chr1 51837254 51839118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4023 10 324 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 35.616 1.79e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr1g4023 HLH 4.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4023 - - gmx:100817334 387.882