Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4008 ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATTAAAAAAATGAGCAACGAGAGCCACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGTCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGCGGTGCAGATGTTGCTCTCGTTGTTTACTCACCTGGGGAGAAGGTATTTTCATTTGGCCACCCCAATGTTGATACAGTCATAGATCGTTATCTCTCTCGAGTCTCATCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGTGCCAACGTGCGTGAGCTTAATACTCAGCTAACTCAGATCAACCACCTATTGGACATTGAGAAGAAACGTGCTGAAGAGTTGAGCCACTTGTGTAAGTCGGTCGAGACTCAATTTTGGTGGGATGGTCCCGTTGATGGGATGAACAGGGTCCAACTTGAATTATTCAAGAATGATTTGGAGGAGCTTAAGAAACTTGTTGCACATCATGCTGATAGGCTTGTAATCCAGAGTGCTCCTACTCAAACCCTTCCTCTTTTTTTTTGA 552 0.4547 MSSGRKSRGRQKIEIKKMSNESHLQVTFSKRRSGLFKKASELCTLCGADVALVVYSPGEKVFSFGHPNVDTVIDRYLSRVSSQNNGTMQFIEAHRSANVRELNTQLTQINHLLDIEKKRAEELSHLCKSVETQFWWDGPVDGMNRVQLELFKNDLEELKKLVAHHADRLVIQSAPTQTLPLFF* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4008 183 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 176 - -
Mtr1g4008 183 PANTHER MADS BOX PROTEIN 7 176 - -
Mtr1g4008 183 Coils Coil 148 168 - -
Mtr1g4008 183 Gene3D - 88 176 - -
Mtr1g4008 183 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mtr1g4008 183 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mtr1g4008 183 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mtr1g4008 183 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mtr1g4008 183 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Mtr1g4008 183 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Mtr1g4008 183 SUPERFAMILY SRF-like 9 82 IPR036879 GO:0003677|GO:0046983
Mtr1g4008 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mtr1g4008 183 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4008 Mtr-Chr1 51701611 51702231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4008 5 176 Type I MADS-box Gene Family AT5G60440 54.286 1.56e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr1g4008 SRF-TF 7.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4008 - - mtr:MTR_1g106070 367.466