Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3990 ATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCTAGTGAGCTTTGTACCATCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGAGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGCTCATAGATCGTTATCTCTCTCAAGTCCCACCCAAAAACAATGGTACCATGCAATTCATTAAGGCTCATCGTAGGTCCAACGTGCGCGGGCTCAATAGTCAGTTGACTCAGATCAATCAACTACTGCACAACGAGAAGAAACGTGCTGAAGAGCTGAGACACTTGCGCAAAGCTACCGAGACTCAATTTTGGTGGGCTGGTCCTGTTAATGGGATGAGTAGGGACCAACTTGAATTTTTCAAAAAGGCTTTGGAGGCGCTTTCGAAACTTGTTGCATATCATGCTGATAGGCTTGTAATCCAGAGTGCTCCTACTCAAATCTTTCCATTTTTTGTTGGAAATGGTTCATCCTTTAACATGCCTCTCGATCATCAATCAAATCCTCCGCAAACTCAAATGTTTCCAACACAGTTTTTTCAAAACCCCATGTTGCAACCTCATTTGTTTGGGTTCAACAATGTGAGGGGAGGAGGCGGATATGGACCCTTCAGATTCTTTTGA 663 0.4449 MSNESNLQVTFSKRRSGLFKKASELCTICGADVALVVFSPGEKVFSFGQPNVDTLIDRYLSQVPPKNNGTMQFIKAHRRSNVRGLNSQLTQINQLLHNEKKRAEELRHLRKATETQFWWAGPVNGMSRDQLEFFKKALEALSKLVAYHADRLVIQSAPTQIFPFFVGNGSSFNMPLDHQSNPPQTQMFPTQFFQNPMLQPHLFGFNNVRGGGGYGPFRFF* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3990 220 Gene3D - 3 69 IPR036879 GO:0003677|GO:0046983
Mtr1g3990 220 SMART madsneu2 1 50 IPR002100 GO:0003677|GO:0046983
Mtr1g3990 220 Gene3D - 70 157 - -
Mtr1g3990 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 2 47 IPR002100 GO:0003677|GO:0046983
Mtr1g3990 220 PRINTS MADS domain signature 13 28 IPR002100 GO:0003677|GO:0046983
Mtr1g3990 220 PRINTS MADS domain signature 28 49 IPR002100 GO:0003677|GO:0046983
Mtr1g3990 220 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Mtr1g3990 220 SUPERFAMILY SRF-like 2 66 IPR036879 GO:0003677|GO:0046983
Mtr1g3990 220 Coils Coil 86 116 - -
Mtr1g3990 220 PANTHER MADS BOX PROTEIN 3 163 - -
Mtr1g3990 220 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 3 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3990 Mtr-Chr1 51522364 51523026 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3990 1 206 Type I MADS-box Gene Family AT5G60440 46.698 3.59e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr1g3990 SRF-TF 2.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3990 - - mtr:MTR_1g105905 398.667