Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3980 ATGGCAATTGTTTCTTGCAAGTTATTACTTACCTTTTATTCTTTTCTCTTTCTCATTACTTTTGTATCTCAAGCCAAAGCCCAACCTGATTTTCTGTACAACTTTTGTAAAAACGATAATGGCAACTACACAGCCAATAGCACCTATCAAAACAACCTCAACACCGTTTTGTCCAATCTAACTTCCAACGCAGAAATCAACTACGGTTTCTACAATATTTCTTATGGCCAAAACACTGACAAAGTAAACGCCATTGGACTCTGTAGAGGAGATGTTAAACCCGACGTTTGCCGCAGTTGTCTCAACGATTCAAGAGTTCTTCTCACAAAACTTTGTCCAAACCAAAAAGAAGCAATTGGTTGGTATGATAACTGCATGTTGCGTTACTCAAACCGATCAATATTCGGCGTTATGGAAGGTTCACCAAAGTTTTATATGTGGAACATATATAATGTAACAGAGGTGGATCAATTTAACCAAGTTCTTGGGAACTTGATGAGGAAACTGAAAGAGAAAGCTGCATCAAGTGATTCTCGTCGTAAATTTGCTACAGATAATGCAACTGATGTAAATTTGAATTTTCAAACCATATATGGTCTTGTTCAGTGCACACCTGATTTGTCAGAGCAAGATTGCAATAATTGTTTAGATGGTGCTATCTCAGATATTCCAAGTTGTTGTAATAACAAGATTGGTGGTAGAGTTCTCAAACCAAGTTGTAATATCAGATATGAAACCTCTAGCTTCTATGATCCTACACCTGCAATAGACCCAGGTGAAACCTCCCCATCAGAAGAAGAAAAAAGCAAATCATCACATACTACCATCGCCATAGTTGTGCCGACTGTTGTTGTTGTTGTTGCCGCCCTGCTAATTTTTATTTGCATATGCTTAAGGAAAAGGAAGGCAAGGATAAATCTCGAAGAAATCGAAGAAGACGACAATGATGATATTGACATGGCTGAGTCATTGCAATTCAACTTTGAGACATTACAAGTTGCTACAAGTAACTTTTCTGAAGCTAATAAACTTGGACATGGAGGATTTGGAGTTGTTTATCACGGTATACTTGCCGGTGGACAAGTCATTGCAGTCAAAAGGTTGTCAACAAATTCAGGACAGGGGGATGTTGAATTTAAGAATGAAGTGCTTTTAGTCGCTAAGCTTCAACATCGAAATTTAGTTCGACTACTTGGTTTTTGTCTGGAAGGAAGAGAAAGATTGCTTGTTTATGAATATGTTCCGAATAAAAGTCTTGATTATTTTATATTTGATCCAATAAAGAAAGCACAGTTGGATTGGGAAAGGCGCTATAAAATCATTGGAGGTATTGCTAGAGGCCTTCTTTACCTTCACGAGGATTCTCAACTTCGTATTATACATCGTGATCTTAAAGCGAGTAACATTCTCTTAGACGAAAAGTTGAATCCTAAAATATCAGATTTTGGAATGGCCAGACTCCTTCTTGTTGATGAAACTCAAGTAAATACAAATAAAATCGTTGGAACATATGGATATATGGCTCCTGAGTATGCAATGTTTGGAGAATTTTCGGTAAAATCAGATGTTTTTAGTTTTGGTGTACTAGTTTTGGAGATTATAAGTGGCCAGAAAGCTTGTCGCGTTATTCATGGGCAGAATCCGGAGGATCTACTTAGCTTTGCATGGAGAAACTGGAGGGCGGGTACAATCACAAATATAATTGATCCATCATTAAGCAATGGTTCACAAAATGAAATAATGAGATGCATTCACATTGCTTTACTATGTGTTCAAGAAAATTTGGTTGAAAGACCAACCATGGCAACCATTGTACTCATGCTTAGTAGTTATTCTATGTCTCTCTCTGTACCTTTGGAGCCTGCATCTATTGTGGGCGGCAGAACTAGAAGCCTTCAAGTTCGAGACATGCAATTTGAGGGAGATAATTCAGGGGCAATGCGACCGAATGAATCCAAGAGTCAATCGGGTGAATCGATAAACCATGCTTCAATTACTGACCCATACCCTCGATAG 2016 0.3805 MAIVSCKLLLTFYSFLFLITFVSQAKAQPDFLYNFCKNDNGNYTANSTYQNNLNTVLSNLTSNAEINYGFYNISYGQNTDKVNAIGLCRGDVKPDVCRSCLNDSRVLLTKLCPNQKEAIGWYDNCMLRYSNRSIFGVMEGSPKFYMWNIYNVTEVDQFNQVLGNLMRKLKEKAASSDSRRKFATDNATDVNLNFQTIYGLVQCTPDLSEQDCNNCLDGAISDIPSCCNNKIGGRVLKPSCNIRYETSSFYDPTPAIDPGETSPSEEEKSKSSHTTIAIVVPTVVVVVAALLIFICICLRKRKARINLEEIEEDDNDDIDMAESLQFNFETLQVATSNFSEANKLGHGGFGVVYHGILAGGQVIAVKRLSTNSGQGDVEFKNEVLLVAKLQHRNLVRLLGFCLEGRERLLVYEYVPNKSLDYFIFDPIKKAQLDWERRYKIIGGIARGLLYLHEDSQLRIIHRDLKASNILLDEKLNPKISDFGMARLLLVDETQVNTNKIVGTYGYMAPEYAMFGEFSVKSDVFSFGVLVLEIISGQKACRVIHGQNPEDLLSFAWRNWRAGTITNIIDPSLSNGSQNEIMRCIHIALLCVQENLVERPTMATIVLMLSSYSMSLSVPLEPASIVGGRTRSLQVRDMQFEGDNSGAMRPNESKSQSGESINHASITDPYPR* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3980 671 Gene3D - 142 249 IPR038408 -
Mtr1g3980 671 Gene3D - 28 133 IPR038408 -
Mtr1g3980 671 Gene3D Phosphorylase Kinase; domain 1 300 413 - -
Mtr1g3980 671 SUPERFAMILY Protein kinase-like (PK-like) 322 608 IPR011009 -
Mtr1g3980 671 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 5 644 - -
Mtr1g3980 671 ProSiteProfiles Protein kinase domain profile. 338 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3980 671 Gene3D Transferase(Phosphotransferase) domain 1 414 617 - -
Mtr1g3980 671 ProSiteProfiles Gnk2-homologous domain profile. 31 134 IPR002902 -
Mtr1g3980 671 ProSiteProfiles Gnk2-homologous domain profile. 140 249 IPR002902 -
Mtr1g3980 671 MobiDBLite consensus disorder prediction 645 663 - -
Mtr1g3980 671 CDD STKc_IRAK 344 605 - -
Mtr1g3980 671 MobiDBLite consensus disorder prediction 640 671 - -
Mtr1g3980 671 Pfam Protein tyrosine and serine/threonine kinase 341 606 IPR001245 GO:0004672|GO:0006468
Mtr1g3980 671 Pfam Salt stress response/antifungal 152 246 IPR002902 -
Mtr1g3980 671 Pfam Salt stress response/antifungal 36 131 IPR002902 -
Mtr1g3980 671 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 644 - -
Mtr1g3980 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Mtr1g3980 671 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Mtr1g3980 671 SMART serkin_6 338 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3980 671 MobiDBLite consensus disorder prediction 251 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3980 Mtr-Chr1 51454170 51457941 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3980 7 625 Receptor kinase-like Gene Family AT4G21410 51.223 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr1g3980 PK_Tyr_Ser-Thr 8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3980 - - gmx:100791056 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0050 5 495783 498881 Mtr1g3980 1 51454170 51457941 PCT