Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3979 ATGACAATTGTATCTAGCAAGCTATTATTTTCCCTTTACTCTTTTCTCCTTTTTATTATCATTATCGTATCTCAAGCCCAAGGCCAACCAAATTTTTTGCGCAACTATTGTATAAACAATAATGGCAACTACACAGCCAATAGCACCTATCAAAACAACCTCAACACCCTTTTATCCAATCTCACTTCCAACACTCAAATCAACTACGGTTTCTACAATTTCTCTTATGGCCAAAACACTGATAAAGTAAACGCCATTGGACTCTGCAGAGGAGATGTTAAACCCGACCTTTGCCGCAGTTGTCTCAACGATTCAAGAGTTCTTCTCACAAAACTTTGTCCAACCCAAAAAGAAGCAATTAGTTGGTATGATAACTGCATGTTGCGTTACTCAAACCGATCAATATTTGGCATTATGGATACTTCATTTTCATATTATAAGTGGAACAATAGAAATGTAACCGATGTGGCTCAATTTAATCAAGTTCTTGGGAACTTGATGAGGAAACTCAATGAAATAGCTGCATCAGGTGATTCTCGTCGTAAGTTTGCTACCGCTAATGCAACTTTGAATTTTGAAACCATATATGGTCTTGTGCAGTGTACACCTGACTTGTCAGGACAAGATTGCAATGATTGTTTAGAGCGTGCTATTTCAGAAACTCCAAGTTTTTTTTATAACAAGATTGGTGGTAGAGTTCTCAAACTAAGTTGTAATATTAGATATGAAATATATTCCTTCTATGGTCCTACGACAGTAATAGACCAAGATGAAACCTCCCCACCAGAAGAAGAAAAAAGCAAATCATCACATACTATCGCCACAGTTGTGCCGACTGTTGTTGTTGTTGCTGCTGCTGGCCTGCTAATTTTCATTTGCATATGCTTAAGGAAAAGGAAGGCAAAGATAAATCTCCAAGATCCAATAAACAAAGAACGATTGGATTGGGAAAGGCGCTACAAAATCATTGGAGGAATTGCAAGAGGTCTTCTTTACCTTCATCAGGATTCTCAACTTCGTATTATACATCGTGATCTTAAAGCAAGTAACATTCTCTTGGACGAAAAGTTGAATCCTAAAATATCTGATTTTGGTATTGCCAGACTACTTCTTGTCGATCAAACTCAAGTTAATACAAATAAAATCGTTGGAACATATGGATATATGGCTCCTGAGTATGCAATGTTTGGAGAATTTTCGGTAAAATCAGATGTTTTTAGTTTTGGTGTACTAGTTTTGGAGATTATAAGTGGACAGAAAGCTTGTTGCGTTCTTCATGGGCAGAGTCAGGAGGATTTACTTAGCTTTGCATGGAGAAACTGGAGAGAGGGTACAATCACAAATATAATAGATCCATCATTAAGCAATGGTTCACGAAATGAAATAATGAGATGCATTCACATTGCTTTACTATGTGTTCAAGAAAATTTGGTTGAAAGACCAAGCATGGCAACCGTTGTAGTCATGCTTAGTAGTTATTCTATCTTTCTCTCCGTACCTTTGGAGCCTGCATCTATTGTGGGAGGTAGAACTAGATGCCTTCGAGTTCGAGACATGCAATCTGAGGGAGAATCAATAAACCATGCTTCAATTAGTGACCCATACCCTCGATAG 1614 0.3761 MTIVSSKLLFSLYSFLLFIIIIVSQAQGQPNFLRNYCINNNGNYTANSTYQNNLNTLLSNLTSNTQINYGFYNFSYGQNTDKVNAIGLCRGDVKPDLCRSCLNDSRVLLTKLCPTQKEAISWYDNCMLRYSNRSIFGIMDTSFSYYKWNNRNVTDVAQFNQVLGNLMRKLNEIAASGDSRRKFATANATLNFETIYGLVQCTPDLSGQDCNDCLERAISETPSFFYNKIGGRVLKLSCNIRYEIYSFYGPTTVIDQDETSPPEEEKSKSSHTIATVVPTVVVVAAAGLLIFICICLRKRKAKINLQDPINKERLDWERRYKIIGGIARGLLYLHQDSQLRIIHRDLKASNILLDEKLNPKISDFGIARLLLVDQTQVNTNKIVGTYGYMAPEYAMFGEFSVKSDVFSFGVLVLEIISGQKACCVLHGQSQEDLLSFAWRNWREGTITNIIDPSLSNGSRNEIMRCIHIALLCVQENLVERPSMATVVVMLSSYSIFLSVPLEPASIVGGRTRCLRVRDMQSEGESINHASISDPYPR* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3979 537 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 5 307 - -
Mtr1g3979 537 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 306 526 - -
Mtr1g3979 537 Pfam Salt stress response/antifungal 37 132 IPR002902 -
Mtr1g3979 537 Pfam Salt stress response/antifungal 152 244 IPR002902 -
Mtr1g3979 537 Gene3D Transferase(Phosphotransferase) domain 1 302 496 - -
Mtr1g3979 537 ProSiteProfiles Gnk2-homologous domain profile. 32 135 IPR002902 -
Mtr1g3979 537 SMART serkin_6 223 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3979 537 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 306 526 - -
Mtr1g3979 537 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 307 - -
Mtr1g3979 537 ProSiteProfiles Protein kinase domain profile. 168 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3979 537 Gene3D - 139 247 IPR038408 -
Mtr1g3979 537 Gene3D - 30 134 IPR038408 -
Mtr1g3979 537 SUPERFAMILY Protein kinase-like (PK-like) 304 490 IPR011009 -
Mtr1g3979 537 ProSiteProfiles Gnk2-homologous domain profile. 141 247 IPR002902 -
Mtr1g3979 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 341 353 IPR008271 GO:0004672|GO:0006468
Mtr1g3979 537 Pfam Protein tyrosine and serine/threonine kinase 304 488 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3979 Mtr-Chr1 51436332 51439752 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3979 307 537 Receptor kinase-like Gene Family AT4G38830 57.872 2.77e-84 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr1g3979 PK_Tyr_Ser-Thr 1.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3979 - - ahf:112705482 437.573