Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3976 ATGGCTCCACTCATCACTCCTGTTGCTGCCATTGTTGCTGGAAAGATCAACATCAAGCTTCGAGTTCGTGTCGTTCATGTTTGGACCGTGTCTGAGTTCAACAACCCAAATGAGGATAACTCTATTCACATGCTATTGCTTGATGACAAGCTTGGAAAGATACAAGCATCTGCTAAGAAACATTTGGTGCCAAGGATAAGGTCAAACGTAGAAGAGGGATCTACATACGACATTGAAAATGTTTTGGTGACTAAAAACGATCCTAAGTATCAGGTTACCCAACATAGGTTCAAGCTAAACCTTATAGACAACACGAAGTTCTTTAAAATTGATGCAGCTACCATTCCTTTAAATCATTTCGATTTTATGCCTTTCAATGAAATATTGGAGGCAGAGAGGGAGGAAAAGGTTGTCGATGTGATTGGACAAGTCGTTGAGAGAGATGAATTGAAAGAGAGGGATGTCAATGGCCGTAGGAGTAAGATAATGGATCTTACCTTACAAGATTCTGAAAGTAGGAGAGTTCATTGCACTTTATGGGCTAACTATGCTGAGAGGATGAATTCATTCCTGGCAGCTCATGATCCATCATCACCTGTCATTGTTTTGATCCAACAATGCAAGCTAAAAAAATACCAAGGGATCATGGGCGTTTCCAATGCTTTTTTTGGAACTAAACTACTACTGGAGGGTGACTTGCCAGAAGCTATTGAATTCAAATCTAAAATTGATGGTGGAGATGTGCAAGTGTCTCAATCTATAAGTCAGAATACAACTTCAACAGTTGTCTCTTTGGTTGATGATATGCTTCAGACTAAGAGAATGACAATTGAGGACTTAATAGAGGCAACTGAGGGATTGTTCTCGCTACAATTTGTGGGATCGAATCAGAATACAGTTGGTATTACCAGGCATGTACAAAGTGCGCAGGGAGAGTGA 939 0.4026 MAPLITPVAAIVAGKINIKLRVRVVHVWTVSEFNNPNEDNSIHMLLLDDKLGKIQASAKKHLVPRIRSNVEEGSTYDIENVLVTKNDPKYQVTQHRFKLNLIDNTKFFKIDAATIPLNHFDFMPFNEILEAEREEKVVDVIGQVVERDELKERDVNGRRSKIMDLTLQDSESRRVHCTLWANYAERMNSFLAAHDPSSPVIVLIQQCKLKKYQGIMGVSNAFFGTKLLLEGDLPEAIEFKSKIDGGDVQVSQSISQNTTSTVVSLVDDMLQTKRMTIEDLIEATEGLFSLQFVGSNQNTVGITRHVQSAQGE* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3976 312 CDD RPA1_DBD_B_like 139 241 - -
Mtr1g3976 312 Gene3D - 114 252 IPR012340 -
Mtr1g3976 312 Pfam Domain of unknown function DUF223 45 136 IPR003871 -
Mtr1g3976 312 CDD RPA1_DBD_A_like 19 107 - -
Mtr1g3976 312 PANTHER REPLICATION FACTOR A 1, RFA1 14 264 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr1g3976 312 SUPERFAMILY Nucleic acid-binding proteins 5 109 IPR012340 -
Mtr1g3976 312 Gene3D - 4 112 IPR012340 -
Mtr1g3976 312 SUPERFAMILY Nucleic acid-binding proteins 119 247 IPR012340 -
Mtr1g3976 312 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 14 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3976 Mtr-Chr1 51411261 51414424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3976 5 264 Core DNA Replication Machinery Family AT2G06510 24.535 5.71e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3976 - - mtr:MTR_1g105785 560.836