Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3971 ATGATTTCTAGGCGCTGTCTTCTGTTTTTACTTCTTCTGTTTTTCATACTTAAATCTGAAGCCAGCGACCAGCTCATTTTCCGCTACCATGAATGTGGAAACTTCACCGGCGATAGTGCCTACCAGATAAACCGTGACACTGTTTTAGAACTAATATATTCCGACAAAAAAATAGACTATGGTTTCTACAATTTCTCATATGGTGAAGGACCCGACAAAATAAACGCAATAGGCTTTTGTAGAGGAGACATTAATCAAGAGGAGTGTCGCGGTTGTTTGAAAAAATCTGCAACCCTTCTGACAGATCGATGTGGAGAACAAAAAGAAGCAATTGGTTACTATGACTTGTGTATCTTACGTTATTCAAATGATTCAATTTTTGGTATCATGGAAACTAAAACAAGTAAGTATTTCGATATGGAAGGCAAAACAGTAGGGAATGATGCATTTAATCAGACACTTATTGATTTGTTGGATGAACTTAAAAGTGTGGCCATTGATGGTGATTCGCGTAAGAAGTTTGCTGAAAAGAGTGTGAAAGTAATGAATGAATCAAGTAGTAGAAGTGATGTTAATGACACTATTTATGGTTTGGTTCAGTGTACACCAGATTTGTCTAAACAAGAATGTACTGAATGTTTGGATTCGGCTTTCGGGAATTTTTCAAGATGGTGTATGAAAGGTTGTATGTATCTTGGTCCAAGTTGTTCATTTAGATATGACATAGTTCCATTTTTCCAATCCATTTTCAACAATACAGAGTCACCAGCACCACAGCCTTCGAAAGTAATTGCTCCTGCACTTTCTCCTAAACCACGAAAAGGAAAGAGCAGGAAAATAACAACGGCGATCGCTATCGTTGTAGCAGTTGTTGTGGCTGGCATACTAGTTATGGGTATATGCATTTATTTTGAAAGGAGAAAATCAAGACCTGAATTTGAAGGCCAAGGGAAAAATGAAGATGAATCTGAAGCTGAAACTGGTGATGATCTTAAAGTTGGAGATTTGTTGCAATTTGACTTTGAAACCATCAGAATAGCTACAAGCAACTTCTCTGATGCAAATAAACTTGGTGAGGGTGGTTTTGGAACTGTTTATAAGGGTACACTCCCTGATGGACAAGATATTGCTATCAAAAGGTTGGCTAACAATTCTAAGCAAGGAGAAACAGAATTTAAGAACGAAGTGTTGCTGACAGGGAAGCTTCAACATCGAAATTTAGTTAAACTACTAGGTTTCTGTTTACAAAAAAGAGAAAGACTACTAATTTATGAGTTTGTCTCCAATAAAAGTCTTGATTATATCATATTTGATCCAATCAAGCGTGCAGATTTGAATTGGGAAAGACGCTACAAAATTATAAAAGATATTGCCCGTGGTCTTCTTTATCTTCACGAAGATTCTCGATTACAAATTGTTCACCGTGATCTCAAAACAAGTAATATTTTACTAGATGACGAGCTGAATCCAAAAATTACAGATTTTGGCATTGCAAAATTGTTTGATGCCAATCAAACTCATGGCATGACAAGCACCGTTATTGGAACTTACGGATACATGGCTCCAGAGTACATTAAACATGGAGAATTTTCGATCAAGTCAGATGTGTTCAGTTTTGGTGTAATTATTTTAGAAATTGTTTGTGGCCGGAGAAACACTAAGATCCGTGATGGGGACAATACTGAGGATCTATTAGACATGGCATGGAAAAATTGGAAGGCAGGGACAAGTTCAGATATCGTTGATCCCATATTAGAACAAGGTTTAAACAAGAATGAAACAATGAGATGCATCCATGTTGGATTACTTTGTGTTCAAGAAGATATAGATGTGAGACCAACTATGAGTTCTGTTCTATTAATGCTTAATAGCACCACTTTCCCACTCCCTGAACCTTCGGAACCTCCATTTTTAATGCAACCCAAAAGGGCATTATCTATATCATTAAGTGAGCAATATTCAGGTCCCACAAAGTCAACTGATTCAGGATCAGGAAGTCAATTTACTCAAGGATCAACAAGTAAGTCCTCGGTTACAGATCAATAA 2046 0.37 MISRRCLLFLLLLFFILKSEASDQLIFRYHECGNFTGDSAYQINRDTVLELIYSDKKIDYGFYNFSYGEGPDKINAIGFCRGDINQEECRGCLKKSATLLTDRCGEQKEAIGYYDLCILRYSNDSIFGIMETKTSKYFDMEGKTVGNDAFNQTLIDLLDELKSVAIDGDSRKKFAEKSVKVMNESSSRSDVNDTIYGLVQCTPDLSKQECTECLDSAFGNFSRWCMKGCMYLGPSCSFRYDIVPFFQSIFNNTESPAPQPSKVIAPALSPKPRKGKSRKITTAIAIVVAVVVAGILVMGICIYFERRKSRPEFEGQGKNEDESEAETGDDLKVGDLLQFDFETIRIATSNFSDANKLGEGGFGTVYKGTLPDGQDIAIKRLANNSKQGETEFKNEVLLTGKLQHRNLVKLLGFCLQKRERLLIYEFVSNKSLDYIIFDPIKRADLNWERRYKIIKDIARGLLYLHEDSRLQIVHRDLKTSNILLDDELNPKITDFGIAKLFDANQTHGMTSTVIGTYGYMAPEYIKHGEFSIKSDVFSFGVIILEIVCGRRNTKIRDGDNTEDLLDMAWKNWKAGTSSDIVDPILEQGLNKNETMRCIHVGLLCVQEDIDVRPTMSSVLLMLNSTTFPLPEPSEPPFLMQPKRALSISLSEQYSGPTKSTDSGSGSQFTQGSTSKSSVTDQ* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3971 681 Gene3D Transferase(Phosphotransferase) domain 1 427 627 - -
Mtr1g3971 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Mtr1g3971 681 SUPERFAMILY Protein kinase-like (PK-like) 336 654 IPR011009 -
Mtr1g3971 681 MobiDBLite consensus disorder prediction 255 275 - -
Mtr1g3971 681 Gene3D Phosphorylase Kinase; domain 1 314 426 - -
Mtr1g3971 681 MobiDBLite consensus disorder prediction 648 681 - -
Mtr1g3971 681 Pfam Protein kinase domain 352 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3971 681 ProSiteProfiles Protein kinase domain profile. 351 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3971 681 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Mtr1g3971 681 CDD STKc_IRAK 357 623 - -
Mtr1g3971 681 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 9 651 - -
Mtr1g3971 681 ProSiteProfiles Gnk2-homologous domain profile. 132 245 IPR002902 -
Mtr1g3971 681 ProSiteProfiles Gnk2-homologous domain profile. 23 126 IPR002902 -
Mtr1g3971 681 Gene3D - 22 125 IPR038408 -
Mtr1g3971 681 Gene3D - 133 245 IPR038408 -
Mtr1g3971 681 Pfam Salt stress response/antifungal 32 123 IPR002902 -
Mtr1g3971 681 Pfam Salt stress response/antifungal 146 241 IPR002902 -
Mtr1g3971 681 SMART serkin_6 351 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3971 681 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 9 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3971 Mtr-Chr1 51367936 51374068 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3971 33 669 Receptor kinase-like Gene Family AT4G21410 44.954 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr1g3971 Pkinase 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3971 - - gmx:100789471 724.546