Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3970 ATGATTTCTTGGCGTTGTCTTCTGTTTTTACTTCTTCCTTTGTTTTTCATACTAAAAACTGAAGCTAGCGACCAGCTCATTTTCCGCTACCACGAATGTAACCAAATGCTCGGAAACTTCACTGGCGGTAGTGCCTACCAGATCAACCGTGACACGGTTTTAGAGCAAATATATTCAGACCAAGAAATAGACTACGGTTTCTACAATTTCTCGTATGGCGAAGAACCTGACAAAGTAAATGCAATTGGTTTTTGTAGAGGAGACATTAATCCAGAGGAATGTCGCGGTTGTTTGAAATCATCGGCTACACTTCTCGTGGATCGATGTGGAATACAAAAAGAAGCAATTGGTTACTTCGACTTGTGTAGTTTACGTTATTCAAATGATTCAATTTTTGGTGTCATGGAAACTAAAACAAGTAATTATTTCAATATCAAAGCTAATACAAGGGCGGATGATGCATTTAATCAAACACTTCTTGATTTGTTGGATGAACTTAAAACCGTGGCCGCTGATGGTGATTCGCGTAAGAAGTTTGCTGAAAAGAGTGTGAAAGTAATTGATGAATCAAGTAGTAGTAGTAATACTAATGACACAATTTATGGTTTGGTTCAGTGTACACCGGATCTGTCTAAGCAAGAATGTAATGAATGTTTAGATTCGGCTTTCGGAGGTTTTTCAAGATGGTGTATGAAAGGTTGTTTATATCTTGGTCCAAGTTGTTCTGTTAGATACGACAACTCTTCCTTTTATAAAACCATAGTCCCCGTTACAGAGCAACCAACAGCAGCACCGCAACCTTCCCAAACACTTCCTCCTAAAACTAACACAACATCTACCGGCAAAGGAAAGGGGAGGAAATTAAAAACGGCCATCGCTATCGTTGTAGCAGTTGTTGTGGCTGGCATACTGCTTGTGGGTATATGCATTTATTTTGAAAGGAGAAGGAAAAGACCTGAATATACGGCTGAATTTGAAGGCCAAGATAAAAATGAAGATGAAGATGAAGCTGAAGCTGGTAATAATCTTAAAGTTGGCGACTTGTTGCAATTTGACTTTGCAACCATCAGATTAGCTACAAGCAACTTCTCTGATGCAAATAAGCTTGGTCAAGGTGGATTTGGAACTGTTTATAAGGGTACGCTCTCAGATGGACATGATATTGCTATCAAAAGGTTGGCTAACAATTCTGAGCAAGGAGAAACAGAATTTAAGAACGAAGTGTTATTGACAGGGAAGCTTCAACATCGAAATTTAGTTAAGCTATTAGGTTTCTGCTTACAAAGAAAAGAAAGGCTACTGATATATGAGTTTGTCCCCAATAAAAGTCTTGATTATATCATATTTGATCCAATCAAGCGTGCAAATTTAAATTGGGAAAGACGCTTCAAAATCATAAAAGATATTGCACGTGGCCTTCTTTATCTTCATGAAGATTCTCGATTACAAATTGTTCATCGTGATCTCAAAACAAGTAACATTTTGCTAGATGAAGAGATGAACCCAAAAATTACAGATTTTGGAATCGCAAGATTGTTTGATGCCAATCAAACTCATGGCATGACAAAGACCGTTGTTGGAACAGTTGGATACATGGCTCCGGAGTACATTAGACATGGACAATTCTCAGTTAAGTCAGATGTGTTTAGTTTTGGTGTAATAATTTTAGAAATTGTATGTGGCCAGAGAAACACTGAGATTCGAGATGGGGAAAATATAGAGGATCTATTAGGCATTGCATGGAAAAATTGGAAAGCAGGGACAACTTCAGATATTGTAGATCCAATATTACACCAAGGTTTTAATAAGAATGAAAAAATGAGATGCATCCATGTTGGATTACTTTGTGTTCAAGAAGATATAGCTATGAGACCAAATATGAGTTCAGTTTTACTAATGCTTAATAGCACCACTTTCCCACTCCCTGAACCTTCGGAACCTCCATTTTTAATGCAACCCAAAAGGGCATTATCTATACCATTAAATGAACAATATTCTGTGCCCACAAAGTCAAGTGATTCAGGATCAGGAAGTCAAATTACTCAAGGATCAACAAGTAAGTCTTCAGGTATAGATCAATGA 2082 0.3751 MISWRCLLFLLLPLFFILKTEASDQLIFRYHECNQMLGNFTGGSAYQINRDTVLEQIYSDQEIDYGFYNFSYGEEPDKVNAIGFCRGDINPEECRGCLKSSATLLVDRCGIQKEAIGYFDLCSLRYSNDSIFGVMETKTSNYFNIKANTRADDAFNQTLLDLLDELKTVAADGDSRKKFAEKSVKVIDESSSSSNTNDTIYGLVQCTPDLSKQECNECLDSAFGGFSRWCMKGCLYLGPSCSVRYDNSSFYKTIVPVTEQPTAAPQPSQTLPPKTNTTSTGKGKGRKLKTAIAIVVAVVVAGILLVGICIYFERRRKRPEYTAEFEGQDKNEDEDEAEAGNNLKVGDLLQFDFATIRLATSNFSDANKLGQGGFGTVYKGTLSDGHDIAIKRLANNSEQGETEFKNEVLLTGKLQHRNLVKLLGFCLQRKERLLIYEFVPNKSLDYIIFDPIKRANLNWERRFKIIKDIARGLLYLHEDSRLQIVHRDLKTSNILLDEEMNPKITDFGIARLFDANQTHGMTKTVVGTVGYMAPEYIRHGQFSVKSDVFSFGVIILEIVCGQRNTEIRDGENIEDLLGIAWKNWKAGTTSDIVDPILHQGFNKNEKMRCIHVGLLCVQEDIAMRPNMSSVLLMLNSTTFPLPEPSEPPFLMQPKRALSIPLNEQYSVPTKSSDSGSGSQITQGSTSKSSGIDQ* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3970 693 Gene3D Transferase(Phosphotransferase) domain 1 439 639 - -
Mtr1g3970 693 ProSiteProfiles Gnk2-homologous domain profile. 137 250 IPR002902 -
Mtr1g3970 693 MobiDBLite consensus disorder prediction 262 284 - -
Mtr1g3970 693 Pfam Salt stress response/antifungal 148 247 IPR002902 -
Mtr1g3970 693 Pfam Salt stress response/antifungal 33 128 IPR002902 -
Mtr1g3970 693 CDD STKc_IRAK 369 635 - -
Mtr1g3970 693 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 9 662 - -
Mtr1g3970 693 Pfam Protein kinase domain 364 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3970 693 MobiDBLite consensus disorder prediction 661 693 - -
Mtr1g3970 693 Gene3D - 136 250 IPR038408 -
Mtr1g3970 693 Gene3D - 26 130 IPR038408 -
Mtr1g3970 693 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Mtr1g3970 693 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 9 662 - -
Mtr1g3970 693 SUPERFAMILY Protein kinase-like (PK-like) 349 666 IPR011009 -
Mtr1g3970 693 ProSiteProfiles Protein kinase domain profile. 363 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3970 693 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Mtr1g3970 693 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
Mtr1g3970 693 Gene3D Phosphorylase Kinase; domain 1 324 438 - -
Mtr1g3970 693 SMART serkin_6 363 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3970 693 MobiDBLite consensus disorder prediction 662 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3970 Mtr-Chr1 51355777 51362403 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3970 33 650 Receptor kinase-like Gene Family AT4G38830 46.497 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr1g3970 Pkinase 4.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3970 - - gmx:100787936 727.628