Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3968 ATGTATATCATCAATTCCTCAACAACAACACAATTGATTCTTCTTCTTCTTCTTCTTGCATCCTTGTTAACTTCACTCACCTTTTCATTATCAGTATCTCCAATATACAACTCCCATGCTTGCACCGACACCTCATATTACCAACCAAATTCAAATTTCCAAACAACTTTAAAAACCCTTCTCTCTTCACTCGTCAACACCACCATACACAACACTTTCTACACCTCCCACATACCCCTATTCAATTCCCCCAATGACTTAAAAGGAATCTTCCTCTGCCGGGCCGACGTTACTCCCTCCATATGCCACAACTGCGTAACCGCCGCAGCAAATAACATCACAACTCTCTGCAAAAACCAAACAGAGTCTATTATCTGGTACGACCAATGTTTTTTACGTTACTCCAACGATTCCTTCTTGAACCATATGGTTCCAGCAATAACCTTGGAATCAGATGAAAATGTTCCTGATTCAGAATCTACACTGTTCAGTGATTTTCTAGCAAACTTTTTGAAGGGTTTAGCATATGAAACTGTGAATTCTCCTTCAGGACAGAAATTTGCTGCCAAAGAAGAAATATTCTTGGGTTCTGTTAAGGTTTATTCTTTGGCACAGTGTACACCTGATTTGTCTACGTTTGATTGTAATACATGCTTGCAAAGTGCCATTAGTTCTATTGGAAATTGTTGTAATGGGAAACGCGGTGCAAGATCACTTCTTCCGAGTTGTAATATACGATATGAATTTTACCCGTTTTATAACGTTTCTGCTGTTTCTACTCAGCCAAAACTTACCTCTCCGTCTTCAGGAAAGAGCACTGTGCCTTTAATCATTGCGATTTTTGTTCCAACTGTTGTTGTTATGGCACTTCTCATTGTCGGCTTCTACTTCCTGCGTAAGAGGGCAATCAAGAAGTATGAGTATAGTAATACATTCGTCCAGGATCCATCTTCAATTCGGAGAGAGGATCTTACAGATATAGATTGTTTGCAATTTGACTTTTCCACTATTGAAGCTGCCACAAATTGTTTCTCTGATGAGAACAAGATTGGCCAAGGTGGATTTGGTGTGGTTTATAAGGGTGTCCTTCCTAACGGACTAGAGATAGCTGTGAAGAGGTTGTCGATAACCTCCTTGCAGGGAGCAATAGAGTTCAGGAATGAAGCTTCCCTTGTAGCCAAGCTTCAACATAGAAATTTAGTGAGAATGTTTGGATTTTGTTTGGAGGGGAGGGAAAAGATGCTTGTTTATGAATACATACCAAACAAAAGCCTCGATCACTTTCTATTTGATTCTGCAAAGCAAAGGGAGTTAGATTGGTCTAGTCGCCATAAGATTATAGTTGGCATCGCTCGAGGGATTCTTTATCTACACGAAGACTCCCAACTTAGAATTATTCATCGTGATCTCAAAGCCAGCAATGTTCTATTAGATGAAAATATGAACCCAAAGATTTCAGATTTTGGGATGGCAAAAATTTTCCAGCCAGATCAGACTCAAGTAAATACAGGAAGGATAGTAGGGACTTACGGCTACATGTCTCCAGAATATGCAATGCGCGGACAGTTCTCTGTGAAGTCAGATGTGTTTAGCTTCGGTGTCTTAGTTTTGGAAATCGTTAGTGGCAAGAAGAATACCGATTTAAATCAAAGGAATCATACTGATGATCTCTTAAGCTATGCTTGGAAAAAATGGTCAGAGCAAACACCTCTGGAGTTACTGGATCCAACACTTAGAGACTCTTATTCAAGAAATGAAGTTATGAGATGCATCCATATTGGTTTATTGTGTGTTCAGGAAAGTCCATATGACAGGCCATCCATGGAAACTATTGCACTTATGCTCAACAGTTATTCAGTTACCTTGTCATTACCTCGACAACCACCGTCTTTAATGCGTGGAAGAACACCTGACAGAATAAAGCAAGGGCTTGATTCTGATCAGTCTACCACATGTTCAATTCCATGGTCTGTGAATGAAGTATCCATTACTGAAGTATACCCTCGATAA 2010 0.3975 MYIINSSTTTQLILLLLLLASLLTSLTFSLSVSPIYNSHACTDTSYYQPNSNFQTTLKTLLSSLVNTTIHNTFYTSHIPLFNSPNDLKGIFLCRADVTPSICHNCVTAAANNITTLCKNQTESIIWYDQCFLRYSNDSFLNHMVPAITLESDENVPDSESTLFSDFLANFLKGLAYETVNSPSGQKFAAKEEIFLGSVKVYSLAQCTPDLSTFDCNTCLQSAISSIGNCCNGKRGARSLLPSCNIRYEFYPFYNVSAVSTQPKLTSPSSGKSTVPLIIAIFVPTVVVMALLIVGFYFLRKRAIKKYEYSNTFVQDPSSIRREDLTDIDCLQFDFSTIEAATNCFSDENKIGQGGFGVVYKGVLPNGLEIAVKRLSITSLQGAIEFRNEASLVAKLQHRNLVRMFGFCLEGREKMLVYEYIPNKSLDHFLFDSAKQRELDWSSRHKIIVGIARGILYLHEDSQLRIIHRDLKASNVLLDENMNPKISDFGMAKIFQPDQTQVNTGRIVGTYGYMSPEYAMRGQFSVKSDVFSFGVLVLEIVSGKKNTDLNQRNHTDDLLSYAWKKWSEQTPLELLDPTLRDSYSRNEVMRCIHIGLLCVQESPYDRPSMETIALMLNSYSVTLSLPRQPPSLMRGRTPDRIKQGLDSDQSTTCSIPWSVNEVSITEVYPR* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3968 669 Gene3D Phosphorylase Kinase; domain 1 308 419 - -
Mtr1g3968 669 Gene3D - 147 252 IPR038408 -
Mtr1g3968 669 Gene3D - 35 139 IPR038408 -
Mtr1g3968 669 Pfam Salt stress response/antifungal 41 136 IPR002902 -
Mtr1g3968 669 Pfam Salt stress response/antifungal 158 249 IPR002902 -
Mtr1g3968 669 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 668 - -
Mtr1g3968 669 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Mtr1g3968 669 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 668 - -
Mtr1g3968 669 ProSiteProfiles Gnk2-homologous domain profile. 143 252 IPR002902 -
Mtr1g3968 669 SUPERFAMILY Protein kinase-like (PK-like) 330 636 IPR011009 -
Mtr1g3968 669 Pfam Protein tyrosine and serine/threonine kinase 347 612 IPR001245 GO:0004672|GO:0006468
Mtr1g3968 669 CDD STKc_IRAK 350 616 - -
Mtr1g3968 669 Gene3D Transferase(Phosphotransferase) domain 1 420 623 - -
Mtr1g3968 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Mtr1g3968 669 ProSiteProfiles Gnk2-homologous domain profile. 35 139 IPR002902 -
Mtr1g3968 669 ProSiteProfiles Protein kinase domain profile. 344 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3968 669 SMART serkin_6 344 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3968 Mtr-Chr1 51319996 51323628 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3968 18 669 Receptor kinase-like Gene Family AT4G05200 47.400 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr1g3968 PK_Tyr_Ser-Thr 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3968 - - cam:101512516 1037.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3968 1 51319996 51323628 Mtr1g3968 1 51319996 51323628 ECH