LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr1g3966	ATGTTATTGGTAGCCAGCTACTGCCTACATCCATCCATGGCTTCCAATATCAAAGTGTTAGTCTTCTTCTTAACCATTTCAATCATCTTCCTCAATTTTGCAATAAATTCTCATGCACAAGACCCAAATTTTCTCTACCAAGTTTGCTCAAAAAACAATTTCACATCCAACAGCACCTACCAAACAAACCTCAAAACCCTCTTCTCTTCCTTATCTTCCAAGGCAAAAACCGATCAAAACATCCAATTCTTCAACAACACCGTCGCCGGAAAAAATCATTCAGAAACAGTTTATGGACTATATATGTGCAGAGTTGACATCCCCTCTAATCTATGCACATCATGCGTTGGAAACGCAACTCAAAGACTGTCCACAGATAAAGAGTGCACTGTTTCTGTTGCAGCAGTTATGTGGTACGATGAATGCATGGTTCGGTATTCAAACAAATCATTCTTTTCAACAGTTGCAACAGGACCAGGCTATGTTCTCCCAAGTCCAACTAACATGACAAACCAAGGAAGCTTCAACCGTTTGTTGTATGATACGTTGAACAAAACTTCAGATGAAGCTTCTTCTTCTTCAAAGAATTTCGCTACAAGGGAAGCGAAAATAAATATATTTCAGAATCTTTATTGTTTAGCTCAGTGTACACAAGATATTGAAGAAAGAGAGTGTAGAAGTTGTCTTTATGGTTTGATAAATTCAGATCTTCCAAGGTGTTGTGCAGGAACGCAAGGTGGAAGAGTTTTGTATCCTAATTGTGTTGTAAGGTTTGAAATTTACCCTTTCTATCGTTCTCTTACTTTGCCACCAACTCCAGCGCCTGCAGGACTCGTTCCATCACCCAATTCCGCAGGAAAATCACGAATAGCTATCATTGTTGCTATACCCATTGTGGTTGCTTCTACAATAGTCTTCGCTGTTTGCTTCTATTATCGAAGGAGAAAAGCGAGAACAAGCAGGTCCAATATTCTCCTCCAAGAAAACTTTGGTCGTGAAAGTACCACTTTAGAGGGGTTGCAATTCGATTTAGCTACAATTGCTACAGCAACAAACAATTTCTCACATGAGAACAAGATTGGAAAAGGTGGATTTGGAGAAGTTTACAAGGGCACTCTACGTGATGGACGAGATATAGCTGTCAAGAGGCTTTCAACAAGTTCCACACAAGGTTCGATTGAGTTCAAGAATGAGATTTTATTGATAGCCAAGCTACAACATAGAAACCTTGTGGCATTGATAGGTTTTTGCCTAGAAGAGCAAGAGAAGATTCTCATTTACGAATATGTCCCAAACGGAAGTCTTGATCATTTTCTATTCGGGGCTCAACAACAAAAGTTAAGCTGGTCCGAGCGCTACAAAATCATAGGAGGAACTGCTTTAGGAGTTCTTTATTTACATGATTATTCTCGACTAAAAGTTATACATCGTGATCTTAAACCTAGTAATATTTTATTAGATGAACATATGAATCCTAAAATCTCAGATTTTGGCATGGCTAGAATTGTTGACATTGGCCAAGATCGCGCTAAAACTACCAGAATTGTGGGAACATATGGTTATATGTCTCCTGAATATGCAATGCTTGGAAAATTCTCTGAAAAATCAGACGTTTTTAGTTTTGGAGTAATGATCATAGAGATAATCACCGGAAAAAGGAATGCTAAGTCTTACGAATCAAACCATGATGCTAAAGGTCTCTTGAGCTATGTTTGGAGACAATGGAATGACCAAACATTGTTGACTGCAATTGACTCAAATATAAAAGAAAAATATTCTCAAATTGAAGTTATAAAATGCATTCAAATTGGTTTATTATGTGTCCAAGAAAATCCAAATGCTAGACCTACAATGGCAACAGTCGTTTCATATCTTACTAATCACTCACTTGAACTGCCATTTCCACAAGAACCAGCATTTGTGTTGCATAGTACAATTGATCAAAAAATTGTTGGACAGCAGGAATCAAGCTCAGGTCTATCAGCTAGTAGTTCTAAACCATTTTCTGTCAATGACATGTCAATAAGTACATTTTATCCTCGTTAA	2046	0.3773	MLLVASYCLHPSMASNIKVLVFFLTISIIFLNFAINSHAQDPNFLYQVCSKNNFTSNSTYQTNLKTLFSSLSSKAKTDQNIQFFNNTVAGKNHSETVYGLYMCRVDIPSNLCTSCVGNATQRLSTDKECTVSVAAVMWYDECMVRYSNKSFFSTVATGPGYVLPSPTNMTNQGSFNRLLYDTLNKTSDEASSSSKNFATREAKINIFQNLYCLAQCTQDIEERECRSCLYGLINSDLPRCCAGTQGGRVLYPNCVVRFEIYPFYRSLTLPPTPAPAGLVPSPNSAGKSRIAIIVAIPIVVASTIVFAVCFYYRRRKARTSRSNILLQENFGRESTTLEGLQFDLATIATATNNFSHENKIGKGGFGEVYKGTLRDGRDIAVKRLSTSSTQGSIEFKNEILLIAKLQHRNLVALIGFCLEEQEKILIYEYVPNGSLDHFLFGAQQQKLSWSERYKIIGGTALGVLYLHDYSRLKVIHRDLKPSNILLDEHMNPKISDFGMARIVDIGQDRAKTTRIVGTYGYMSPEYAMLGKFSEKSDVFSFGVMIIEIITGKRNAKSYESNHDAKGLLSYVWRQWNDQTLLTAIDSNIKEKYSQIEVIKCIQIGLLCVQENPNARPTMATVVSYLTNHSLELPFPQEPAFVLHSTIDQKIVGQQESSSGLSASSSKPFSVNDMSISTFYPR*	682

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr1g3966	681	Gene3D	Transferase(Phosphotransferase) domain 1	430	632	-	-
	Mtr1g3966	681	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	280	649	-	-
	Mtr1g3966	681	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	31	270	-	-
	Mtr1g3966	681	Gene3D	-	161	263	IPR038408	-
	Mtr1g3966	681	Gene3D	-	41	151	IPR038408	-
	Mtr1g3966	681	CDD	STKc_IRAK	360	627	-	-
	Mtr1g3966	681	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	280	649	-	-
	Mtr1g3966	681	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	31	270	-	-
	Mtr1g3966	681	ProSiteProfiles	Gnk2-homologous domain profile.	157	263	IPR002902	-
	Mtr1g3966	681	ProSitePatterns	Protein kinases ATP-binding region signature.	360	382	IPR017441	GO:0005524
	Mtr1g3966	681	ProSiteProfiles	Gnk2-homologous domain profile.	42	151	IPR002902	-
	Mtr1g3966	681	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	474	486	IPR008271	GO:0004672\|GO:0006468
	Mtr1g3966	681	SUPERFAMILY	Protein kinase-like (PK-like)	339	646	IPR011009	-
	Mtr1g3966	681	Gene3D	Phosphorylase Kinase; domain 1	315	429	-	-
	Mtr1g3966	681	Pfam	Salt stress response/antifungal	168	260	IPR002902	-
	Mtr1g3966	681	Pfam	Salt stress response/antifungal	49	148	IPR002902	-
	Mtr1g3966	681	SMART	serkin_6	354	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr1g3966	681	Pfam	Protein tyrosine and serine/threonine kinase	357	625	IPR001245	GO:0004672\|GO:0006468
	Mtr1g3966	681	ProSiteProfiles	Protein kinase domain profile.	354	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr1g3966	Mtr-Chr1	51286114	51302080	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr1g3966	29	681	Receptor kinase-like Gene Family	AT4G05200	45.685	0.0	572

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Mtr1g3966		Pkinase	2.7e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr1g3966	-		-	mtr:MTR_1g105615	995.342