Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3964 ATGATGTTTGGATTGTCCCAATTCTACAACAACGATGATGAACCAGAGATGTTTGGGCAAGTTAGCCCTCCTCCAACAATTAAAGAGGATGAAAAAAGAAGGTTGCAAATGGTGGTAGTTGTTGTTCCAGTCATCCTTTCAACATTGCTTCTAACTTTTTCCTACTACTTGCTAAGGAAAAGAGCAAGAAAGAGCAGTTATAAGGCCTTAATTCTAAAAGAAAATTTTGGTCATGAAAGTACCACTCTAGAGGGTTTGCAATTTGAAATGGACGTAATTAGAACAGCAACAGACAACTTTTCACATGAAAACAAGATTGGCAAAGGTGGATTTGGAGAAGTTTACAAGGGAATTCTTTTTGATGGACGACACATAGCTGTTAAGAGGCTTTCATCAAATTCAAAGCAAGGCATAGTCGAGTTCAAGAATGAAATTTTATTGATAGCCAAGTTACAACAAAGAAATCTTGTGGCATTAATAGGATTTTGCCTAGAAGAGCAAGAGAAGATTCTTATTTATGAATATGTGCCAAATGGGAGCCTTGATTACATTTTATTTGATACTAGACAGCAAAATTTAAGCTGGGATCAACGTTACAAAATTATAGGAGGAACGGCTTTAGGAATTCTTTATTTGCATGAATATTCTCGTCTCAAAGTTATACATCGGGATCTCAAACCTAGTAATGTTCTACTGGATGAAAATATGAATCCTAAAATATCAGATTTTGGAATGGCTAGGATTGTTCAAATAGATCAAGATCGTGGACATACCAACAAAATTGCGGGAACAAGGGGTTACATGTCCCCAGAATATGCAATGCTTGGACACTTTTCAGAGAAGTCGGATGTTTTTAGTTTTGGTGTCATTGTTTTAGAGATTATTACTGGAAAAAGAAATATAAATCCTTATGAATCACATCATTTTACCGAAGGCCTCACAAGTTATGTATGGAGACAATGGAAGAATGAAACTCCATTAATCATATTGGATCCAAAAATTGAAAATTATTCTCGTATTGAAGTTATTAAGTGCATACAGATTGGTTTGTTATGTGTTCAAGAAAATCCAAATGTAAGACCTACAATGGCAACGGTTGTTTCATATCTTAATAGTCATTCACCAGAATTGTCATCCCCACAAGAACCAGCATTTTTCCTACACGATAGAACGAATCAAGATATTGCAGCACAGAAATCAAGTTCTGTGAATAATTTTGTATCATTTTCTGTCAACGAGGTGTCTATAAGTGAATTTTATCCTCGACAGTAG 1272 0.3522 MMFGLSQFYNNDDEPEMFGQVSPPPTIKEDEKRRLQMVVVVVPVILSTLLLTFSYYLLRKRARKSSYKALILKENFGHESTTLEGLQFEMDVIRTATDNFSHENKIGKGGFGEVYKGILFDGRHIAVKRLSSNSKQGIVEFKNEILLIAKLQQRNLVALIGFCLEEQEKILIYEYVPNGSLDYILFDTRQQNLSWDQRYKIIGGTALGILYLHEYSRLKVIHRDLKPSNVLLDENMNPKISDFGMARIVQIDQDRGHTNKIAGTRGYMSPEYAMLGHFSEKSDVFSFGVIVLEIITGKRNINPYESHHFTEGLTSYVWRQWKNETPLIILDPKIENYSRIEVIKCIQIGLLCVQENPNVRPTMATVVSYLNSHSPELSSPQEPAFFLHDRTNQDIAAQKSSSVNNFVSFSVNEVSISEFYPRQ* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3964 423 ProSiteProfiles Protein kinase domain profile. 100 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3964 423 Gene3D Phosphorylase Kinase; domain 1 60 175 - -
Mtr1g3964 423 Pfam Protein kinase domain 101 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3964 423 SMART serkin_6 100 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3964 423 Gene3D Transferase(Phosphotransferase) domain 1 176 385 - -
Mtr1g3964 423 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 22 413 - -
Mtr1g3964 423 ProSitePatterns Protein kinases ATP-binding region signature. 106 128 IPR017441 GO:0005524
Mtr1g3964 423 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 22 413 - -
Mtr1g3964 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Mtr1g3964 423 CDD STKc_IRAK 106 371 - -
Mtr1g3964 423 SUPERFAMILY Protein kinase-like (PK-like) 84 400 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3964 Mtr-Chr1 51272908 51276152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3964 63 422 Receptor kinase-like Gene Family AT4G11530 53.867 1.59e-132 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr1g3964 Pkinase 3.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3964 - - gmx:100785282 552.362