Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3951 ATGCCATTGCTTCCTAAAGAATTGTTTGATAAGTGGAATGATGCATTGTGTGAAGCTCTTTTTGTTACTGTTCCTAAATTCTACTGTCCATTTAAGGATTGTTCTGCTATGTTGTTGGATGAGAATGAAGGGGTGGAAGATATTAGGGAATCTGAATGCCCTTTTTGTCATAGATTGTTTTGTGCAAGGTGTCATGTTCCTTGGCATCCCGGGATTGATTGTGAGGAGTATCAAACATTGAATGCTGATGAACGAGGGCGTGAAGATCTTCTTGTTAGAGAGCTTGCTAACGAGAAAAAATGGAGAAGGTGTCCCACTTGCAAGTTCTATGTTGAAAAAACTGAAGGTTGTTTGCATATCACTTGCAGAATTGAATTAGTGAGTGCAGGGTGGTGTTTGTTTGCAGGTGCCGGTTTGAGTTTTGCTATGCTTGTGGAGAACAATGGACTTCTACTCATGGTGGTTGCCAACCAAGTTAAATAG 483 0.4058 MPLLPKELFDKWNDALCEALFVTVPKFYCPFKDCSAMLLDENEGVEDIRESECPFCHRLFCARCHVPWHPGIDCEEYQTLNADERGREDLLVRELANEKKWRRCPTCKFYVEKTEGCLHITCRIELVSAGWCLFAGAGLSFAMLVENNGLLLMVVANQVK* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3951 160 SMART ibrneu5 10 74 IPR002867 -
Mtr1g3951 160 SUPERFAMILY RING/U-box 85 122 - -
Mtr1g3951 160 Pfam IBR domain, a half RING-finger domain 27 74 IPR002867 -
Mtr1g3951 160 Gene3D - 71 134 - -
Mtr1g3951 160 ProSiteProfiles TRIAD supradomain profile. 1 155 IPR044066 -
Mtr1g3951 160 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 2 131 - -
Mtr1g3951 160 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 2 131 IPR031127 GO:0004842|GO:0016567
Mtr1g3951 160 SUPERFAMILY RING/U-box 13 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3951 Mtr-Chr1 51137423 51138001 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3951 26 123 C3H Transcription Factor Family AT2G19610 29.524 8.98e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3951 K11975 - mtr:MTR_1g105450 277.33