Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3948 ATGCGGGGTTCTAGAAAATCTAGAGCTAGACCAAGGCCTAACCTTTTGAAACAATCCAAATTGATCACAAGGAAGTTGCAAGTTGTTTATAATGATCCTGAGGCAACTGACACATCTGAAGATGAATCACAACATGCAAGAACAACGTCAAAAAGAAGCTTCGTTGAGGTCACTCTTCCTCCTCATGTATCTGCAACTTCTTTGGCTTCTCATAAGAGTTTCTCTAAGAAGTCGAAGATTGTATCGAGGAAAAAGGCGTGTCTTTCAACACAACGTCAAATCAAGAAGAAAGTTATTCCAACAATAACTTCTCCAAAAACAAGGAGACAACCTTCATCCAAATATCGAGGCGTTCGTTTGAGGCCATGGGGAAGATGGGCTGCTGAGATTCGTAATCCTTTAACAAATGTTAGAATTTGGTTGGGAACTTACGATACCGAAGAAGAAGCTTCTCAAGCTTATGAATCCGAAAGGCTTCAAATTGCACTTGATTCTCAGGCAACAAAACCAAAAAGATGCTTCAATAAAGAATCTTCTGCAACCTCTCCAGTTGTAACATTGAACAAGAACTCTTCTGCAAATGATGATGATGCCAATGCTTTAGTGTCAGAGAAATGTTCAACTACTAAAGACTCTAAGAACTTGTTCTTACAAACACCGCCTTCTTCCATGCTTGAGTTGGATACCTTAACATCCAATTTGGTTGAGAAGGTTGATGTTCCATCAAACAATGTAGTCGTTGTTGTAAATAAAGCGAGTGCAATGATGTCTTGTCAACTTCAAGAGCTAGAAATTCCAAATCCTAGTGTTTTTAACCTGCATGAGCCAGTTGTTACTGAGAATCCAATTGGGACTGATCCCAATCTTGGTTTGGGATTTGATTTTGATCAATTTAACATTGATGATTTTGGAAAAGATTTTCAAGAATTTGGTGGCTGTGGTGACTTAGGTGACTTCGAGGATATTCAAATTCATGGATTTGATGACAATGGACCTAGTGAGCTTCCTGATTTTGATTTTGGTGATATTGGTGATGATGACGAATTTGCTGGTTGGATTGATGCGCCCTTCCAACACAACATATATTTTCTCTAA 1095 0.3872 MRGSRKSRARPRPNLLKQSKLITRKLQVVYNDPEATDTSEDESQHARTTSKRSFVEVTLPPHVSATSLASHKSFSKKSKIVSRKKACLSTQRQIKKKVIPTITSPKTRRQPSSKYRGVRLRPWGRWAAEIRNPLTNVRIWLGTYDTEEEASQAYESERLQIALDSQATKPKRCFNKESSATSPVVTLNKNSSANDDDANALVSEKCSTTKDSKNLFLQTPPSSMLELDTLTSNLVEKVDVPSNNVVVVVNKASAMMSCQLQELEIPNPSVFNLHEPVVTENPIGTDPNLGLGFDFDQFNIDDFGKDFQEFGGCGDLGDFEDIQIHGFDDNGPSELPDFDFGDIGDDDEFAGWIDAPFQHNIYFL* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3948 364 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 17 344 - -
Mtr1g3948 364 SMART rav1_2 114 168 IPR001471 GO:0003700|GO:0006355
Mtr1g3948 364 MobiDBLite consensus disorder prediction 1 57 - -
Mtr1g3948 364 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Mtr1g3948 364 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Mtr1g3948 364 ProSiteProfiles AP2/ERF domain profile. 114 177 IPR001471 GO:0003700|GO:0006355
Mtr1g3948 364 Pfam AP2 domain 113 158 IPR001471 GO:0003700|GO:0006355
Mtr1g3948 364 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 17 344 - -
Mtr1g3948 364 CDD AP2 113 154 IPR001471 GO:0003700|GO:0006355
Mtr1g3948 364 Gene3D AP2/ERF domain 113 169 IPR036955 GO:0003700|GO:0006355
Mtr1g3948 364 SUPERFAMILY DNA-binding domain 113 160 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3948 Mtr-Chr1 51106375 51107469 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3948 16 345 AP2-EREBP Transcription Factor Family AT1G68550 29.167 6.52e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr1g3948 AP2 2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3948 - - mtr:MTR_1g105400 687.182