Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3941 ATGGAAGAAAAGGAACAACAACACACAAAAACACTCATTTCTGCTCTCAATTTTCTCTCTCGCGACGTTCCTCTTCCCTCTCACCTTCTCGATTCCGTTTCTTCCATCTATCGTCTCAACAACAATGTCAATGGCGATGTAGAGAGTTCCGGAGATGATTTAATAACAGATCTTGAAGATGCATTATCGAAACAACGCCCGAAATGTGCATCAGGTTTCAAGTTGGAGGAAGCAGTGGAAAGCCGTCATCAAAACCAGATTCGGCATCGGTTAAATGAGCTTCAAGAATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACAAAGTGCCTGCTTGAACTTTATGGACTGAAGTTAGCAGAGTTGCAATCAAAGGTTCGGTCTGATGTGAGTTCTGAATACTGGCTCAATGTTGAATGTGCATATCCTGACCGGAGATTGTTTGATTGGGGCATGATGAGATTACGCCGTCCATTGTATGGAGTTGGAGATCCATTTGCCATGGATGCTGATAATCAATTGAGGAAGAGGCGGGATTCTGAGAGACTGTCAAGATTAGAAGAGGTGGAGAAAAATAATATAGAGACTACAAAAAGAAGGTTTTTTGCAGAAATACTAAATTCTGTCCGCGAGCTCCAGTTACAAATTCAAGCTTCTCTGAAGCGGAGAAAACAGAGGAATGATGGTATCCAGGCATGGCATGGAAGGCAAAGACAAAGGGCAACCCGGGCAGAGAAATTGAGATTTCAAGCCTTGAAGGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAGGAGAGTAAGAATGAAAGATTAACTGTGCTTCTTGAAGAAACAAATAAACTACTTGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACTTCAAACATTCAGATGGCATTGAACCCTTGGAAGATTCCGAAGCTGATTTACCTGAGTCAGATGCTTCAAAGAATGGAATTTATAAGGAATCACCTGTTGATGATGATATAGATGCGATAGATTCTGATCACAATGATGGTGACTCTAATGATTTACTTGAAGGTCAGCGCCAATACAATTCTGCCATACATTCAATTCAGGAAAAGGTAACTGAGCAACCGTCTATACTTCAAGGTGGAGAATTAAGATCATATCAGATAGAGGGGCTCCAATGGATGCTTTCTTTGTTTAATAACAACTTAAATGGGATTTTGGCTGATGAAATGGGGCTTGGGAAAACAATTCAAACGATTTCTCTCATAGCACATCTTTTCGAATACAAAGGTGTGACTGGTCCCCACTTGATTGTTGCTCCAAAGGCAGTTCTGCCAAACTGGATCATTGAATTCTCAACGTGGGCTCCTAGCATTAAAACTATTCTTTATGATGGACGGATGGATGAGAGAAAAGCAATAAAGGAAGAATATTCAGGAGAGGGGAAATTTAATGTTATGATTACACATTATGATCTTATAATGAGAGACAAAGCGTTTCTCAAGAAAATTAAATGGATCTACTTAATTGTAGATGAAGGTCATCGATTGAAGAATCACGAGTCTGTTCTAGCAAAAACCTTGGACAATAGCTATCACATCCAACGAAGACTTTTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAATTGTGGTCCCTGCTTAATTTTCTACTTCCAAACATTTTCAACTCCGTTCAAAATTTCGAGGACTGGTTCAATGCCCCCTTTGCAGACCGAGTTGATGTCTCTCTATCAGATGAAGAACAACTATTAATCATTCGGCGTCTACATCAAGTAATCAGGCCCTTCATATTAAGAAGGAAAAAAAATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAGGTTTATTATCAACAAGTTACTGACGTAGGCAGAGTTGGTTTGGACAACGGTACTGGAAAATCAAAAAGTCTACAGAACTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCTTACCTCTTTGTGGGAGACTATGATATGTATAAATGTAAGGAGGAGATTGTCAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACCGAGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACACTCTCGAAGTTTATTTACGACTTCATGATTTCAAGTATCTTAGACTTGATGGCTCAACAAAAACTGAAGAAAGAGGCTCTCTACTACGGAAATTTAATGCTCCTGACTCCCCATACTTTATGTTTCTCTTAAGCACCCGGGCAGGCGGTCTTGGTTTGAACTTACAAACAGCAGATACTGTTATAATCTTCGACAGCGATTGGAACCCACAAATGGATCAACAAGCCGAGGACCGAGCACATCGTATTGGACAAAAAAAGGAAGTTCGGGTTTTCGTGTTGGTTAGTGTGGGGTCAGTTGAAGAGGTGATTTTAGAACGTGCAAAACAAAAGATGGGTATAGACGCCAAAGTCATTCAGGCAGGACTTTTCAATACAACTTCGACAGCCCAGGACAGAAGAGAAATGTTGGAGGTGATTATGCGTCGAGGTTCAAGCTCACTTGGGGCAGATGTGCCTAGCGAGAGAGAAATTAACCGCCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTCGAGAAAATGGATGAAGAGAGAAGACAAAAGGAAAACTACAGATCACGTCTCATGGAAGAGCATGAATTGCCAGAATGGGTGTATGCTCCAATTAAAAAGGATGACAAAGCCAAAGATTTCAACAGTGGTGTTACTGGAAAGCGGAAAAGAAAAGATGTGATATATGCTGATACATTGAGTGAGCTACAATGGATGCAGGCTATGGAGAATGGTGGGGACATGTCAAAGCTTTCAGCTAAAGGGAAAAGAAGAGAGTCAAGAGACCACCTCTCATCTGACAGCATAGCACAAGCCAGTGATGATACAGGGGCAGATGAAAGCATATTACAGTCGAGGGCAAAAATTGTCCCTACAGAAAACGACAGAACTTGGGAAGATAGTTTCCATGTCACTCCTTCCTCAAAGAGATTCAAGCCTGAAGGAACAAATTTCCAGAAACATGCACACGAGGATGTCAGTGGAAGTGGATTGGACCAGCCTGTTTTCTCCTGGAATATTCACAAAAAGAAGAGATCAAGCCATCTTGGTCAGGGTTCAGCATCTGAGAGTAGAGGGCATAATTCAAATGGAAGAGCAAACTGGAACTGA 3252 0.4157 MEEKEQQHTKTLISALNFLSRDVPLPSHLLDSVSSIYRLNNNVNGDVESSGDDLITDLEDALSKQRPKCASGFKLEEAVESRHQNQIRHRLNELQELPSSRGEDLQTKCLLELYGLKLAELQSKVRSDVSSEYWLNVECAYPDRRLFDWGMMRLRRPLYGVGDPFAMDADNQLRKRRDSERLSRLEEVEKNNIETTKRRFFAEILNSVRELQLQIQASLKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTVLLEETNKLLVNLGAAVQRQKDFKHSDGIEPLEDSEADLPESDASKNGIYKESPVDDDIDAIDSDHNDGDSNDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLFEYKGVTGPHLIVAPKAVLPNWIIEFSTWAPSIKTILYDGRMDERKAIKEEYSGEGKFNVMITHYDLIMRDKAFLKKIKWIYLIVDEGHRLKNHESVLAKTLDNSYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLSDEEQLLIIRRLHQVIRPFILRRKKNEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGTGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKCKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDTLEVYLRLHDFKYLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEVIMRRGSSSLGADVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPEWVYAPIKKDDKAKDFNSGVTGKRKRKDVIYADTLSELQWMQAMENGGDMSKLSAKGKRRESRDHLSSDSIAQASDDTGADESILQSRAKIVPTENDRTWEDSFHVTPSSKRFKPEGTNFQKHAHEDVSGSGLDQPVFSWNIHKKKRSSHLGQGSASESRGHNSNGRANWN* 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3941 1083 Gene3D - 367 610 IPR038718 -
Mtr1g3941 1083 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 690 851 IPR001650 -
Mtr1g3941 1083 PANTHER ATP-DEPENDENT HELICASE BRM 4 1008 - -
Mtr1g3941 1083 Pfam Helicase conserved C-terminal domain 687 800 IPR001650 -
Mtr1g3941 1083 MobiDBLite consensus disorder prediction 964 979 - -
Mtr1g3941 1083 SMART ultradead3 372 565 IPR014001 -
Mtr1g3941 1083 MobiDBLite consensus disorder prediction 1053 1083 - -
Mtr1g3941 1083 Pfam SNF2-related domain 379 667 IPR000330 GO:0005524|GO:0140658
Mtr1g3941 1083 Coils Coil 891 911 - -
Mtr1g3941 1083 CDD SF2_C_SNF 678 811 - -
Mtr1g3941 1083 MobiDBLite consensus disorder prediction 296 347 - -
Mtr1g3941 1083 MobiDBLite consensus disorder prediction 1064 1083 - -
Mtr1g3941 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 857 IPR027417 -
Mtr1g3941 1083 SMART helicmild6 716 800 IPR001650 -
Mtr1g3941 1083 MobiDBLite consensus disorder prediction 980 994 - -
Mtr1g3941 1083 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 388 554 IPR014001 -
Mtr1g3941 1083 SMART SnAC_2 893 953 IPR029295 GO:0042393
Mtr1g3941 1083 PANTHER SNF2/RAD54 HELICASE FAMILY 4 1008 - -
Mtr1g3941 1083 MobiDBLite consensus disorder prediction 1006 1021 - -
Mtr1g3941 1083 Pfam Snf2-ATP coupling, chromatin remodelling complex 894 953 IPR029295 GO:0042393
Mtr1g3941 1083 MobiDBLite consensus disorder prediction 961 1029 - -
Mtr1g3941 1083 Gene3D - 611 831 IPR027417 -
Mtr1g3941 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 601 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3941 Mtr-Chr1 51007599 51016323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3941 683 858 RAD5 or RAD16-like Gene Family AT5G43530 34.270 5.93e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr1g3941 SNF2_N 3.5e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3941 - - gmx:100786280 1837.77