Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr1g3938 | ATGGAGTTTATAAAGGATGTAAAAGTTGTGCTTCAAGATAAGAAGGAAAAGTTTGATGATTTCATGAAACTCCTACATGATTTCAGGGCCAAAAGAATTGATAGAAGAGTCATCAAAGAAGGAATTATGGAGTTGTTGAAAGAACATCAAGATTTAATTTCAAGATTCAACATCTTCTTGCCACCAGGAGATGAAATCCCACTTCTATTCCCAACGTCGTTTGCAACAGCAGTTAAAGTTGCATTTCCATATAAGATGGAAAAGTATGATGAATTCTTGAAACTCGTAGTTGATTACAATGCCAAAAGAATTGATATGAGAGTTTTCAAAGAAGGACTGATGGAGTTGTTTAAAGACCATAAAGATTTACTTTTGGGACTCAACACTTGGTTGCCAGAGGGACACAAAATCTCACTTCCATTGGATGGTGATGAACAACAAGGTGATGATGGATTAGAGTTGAAATATGAACTTCAAGTTGATGAAGCGGCAGCGGCACTCAAAGATGAAGAGAAAGATGACGAACAATAA | 531 | 0.3616 | MEFIKDVKVVLQDKKEKFDDFMKLLHDFRAKRIDRRVIKEGIMELLKEHQDLISRFNIFLPPGDEIPLLFPTSFATAVKVAFPYKMEKYDEFLKLVVDYNAKRIDMRVFKEGLMELFKDHKDLLLGLNTWLPEGHKISLPLDGDEQQGDDGLELKYELQVDEAAAALKDEEKDDEQ* | 177 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr1g3938 | 176 | ProSiteProfiles | PAH domain profile. | 1 | 63 | IPR003822 | GO:0006355 | |
Mtr1g3938 | 176 | SUPERFAMILY | PAH2 domain | 71 | 134 | IPR036600 | GO:0006355 | |
Mtr1g3938 | 176 | PANTHER | PROTEIN, PUTATIVE-RELATED | 73 | 153 | - | - | |
Mtr1g3938 | 176 | PANTHER | PROTEIN, PUTATIVE-RELATED | 1 | 130 | - | - | |
Mtr1g3938 | 176 | Pfam | Paired amphipathic helix repeat | 87 | 131 | IPR003822 | GO:0006355 | |
Mtr1g3938 | 176 | Pfam | Paired amphipathic helix repeat | 16 | 60 | IPR003822 | GO:0006355 | |
Mtr1g3938 | 176 | PANTHER | SIN3B-RELATED | 73 | 153 | IPR039774 | GO:0003714 | |
Mtr1g3938 | 176 | PANTHER | SIN3B-RELATED | 1 | 130 | IPR039774 | GO:0003714 | |
Mtr1g3938 | 176 | Gene3D | Paired amphipathic helix | 1 | 61 | IPR036600 | GO:0006355 | |
Mtr1g3938 | 176 | Gene3D | Paired amphipathic helix | 72 | 132 | IPR036600 | GO:0006355 | |
Mtr1g3938 | 176 | ProSiteProfiles | PAH domain profile. | 64 | 134 | IPR003822 | GO:0006355 | |
Mtr1g3938 | 176 | SUPERFAMILY | PAH2 domain | 2 | 62 | IPR036600 | GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr1g3938 | Mtr-Chr1 | 50986026 | 50986556 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr1g3938 | 1 | 86 | WRKY Transcription Factor Family | AT4G12020 | 32.222 | 9.94e-07 | 46.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | Others | Mtr1g3938 | PAH | 1e-06 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr1g3938 | K11644 | - | mtr:MTR_1g104960 | 186.422 |