Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3938 ATGGAGTTTATAAAGGATGTAAAAGTTGTGCTTCAAGATAAGAAGGAAAAGTTTGATGATTTCATGAAACTCCTACATGATTTCAGGGCCAAAAGAATTGATAGAAGAGTCATCAAAGAAGGAATTATGGAGTTGTTGAAAGAACATCAAGATTTAATTTCAAGATTCAACATCTTCTTGCCACCAGGAGATGAAATCCCACTTCTATTCCCAACGTCGTTTGCAACAGCAGTTAAAGTTGCATTTCCATATAAGATGGAAAAGTATGATGAATTCTTGAAACTCGTAGTTGATTACAATGCCAAAAGAATTGATATGAGAGTTTTCAAAGAAGGACTGATGGAGTTGTTTAAAGACCATAAAGATTTACTTTTGGGACTCAACACTTGGTTGCCAGAGGGACACAAAATCTCACTTCCATTGGATGGTGATGAACAACAAGGTGATGATGGATTAGAGTTGAAATATGAACTTCAAGTTGATGAAGCGGCAGCGGCACTCAAAGATGAAGAGAAAGATGACGAACAATAA 531 0.3616 MEFIKDVKVVLQDKKEKFDDFMKLLHDFRAKRIDRRVIKEGIMELLKEHQDLISRFNIFLPPGDEIPLLFPTSFATAVKVAFPYKMEKYDEFLKLVVDYNAKRIDMRVFKEGLMELFKDHKDLLLGLNTWLPEGHKISLPLDGDEQQGDDGLELKYELQVDEAAAALKDEEKDDEQ* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3938 176 ProSiteProfiles PAH domain profile. 1 63 IPR003822 GO:0006355
Mtr1g3938 176 SUPERFAMILY PAH2 domain 71 134 IPR036600 GO:0006355
Mtr1g3938 176 PANTHER PROTEIN, PUTATIVE-RELATED 73 153 - -
Mtr1g3938 176 PANTHER PROTEIN, PUTATIVE-RELATED 1 130 - -
Mtr1g3938 176 Pfam Paired amphipathic helix repeat 87 131 IPR003822 GO:0006355
Mtr1g3938 176 Pfam Paired amphipathic helix repeat 16 60 IPR003822 GO:0006355
Mtr1g3938 176 PANTHER SIN3B-RELATED 73 153 IPR039774 GO:0003714
Mtr1g3938 176 PANTHER SIN3B-RELATED 1 130 IPR039774 GO:0003714
Mtr1g3938 176 Gene3D Paired amphipathic helix 1 61 IPR036600 GO:0006355
Mtr1g3938 176 Gene3D Paired amphipathic helix 72 132 IPR036600 GO:0006355
Mtr1g3938 176 ProSiteProfiles PAH domain profile. 64 134 IPR003822 GO:0006355
Mtr1g3938 176 SUPERFAMILY PAH2 domain 2 62 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3938 Mtr-Chr1 50986026 50986556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3938 1 86 WRKY Transcription Factor Family AT4G12020 32.222 9.94e-07 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr1g3938 PAH 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3938 K11644 - mtr:MTR_1g104960 186.422