Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3937 ATGAACAGCTCAAGAAGAACAGGTCCCTTGATTGATGATGCAAGGGTGCTTGTAAAGGACGTAGAAGCTGTGTTTCAAGATAAGAGGGAAATGTATGAAGAATTCGTGAAACTCCTACAAGATTTCGGCGCCAAAAGAATTGATAGAAGAGTCGTCAAAGAAGGAGTTACGGAGTTGTTGAAAGAACATCAAGATTTAATTTTAAGATTCAACATCTTCTTGCCACCAGGACATGAAATCTCACTTCCATTGGATGATGATTTACAACAACGTGATCGATCAGCACTCGAAGATCGAGCAATGGCGTTTTTAACAGAAGTTAAGGTTACATTTGAAGATAAGATGGAAAAGTTCAATGAATTCTTGAAACTCCTAGCTGATTACCAAGCCAAAAGAATTGATGTAAGAGTTGTCAAAGAAGGAATGATGGAGTTGTTTAAAGACCATAAAAATTTACTTTCAGGATTCAACACCTTCTTGCCAGAGGGACACAAAATCTCACTTTCATTGGATGGTGATAGAACAACAAGGTGA 534 0.3783 MNSSRRTGPLIDDARVLVKDVEAVFQDKREMYEEFVKLLQDFGAKRIDRRVVKEGVTELLKEHQDLILRFNIFLPPGHEISLPLDDDLQQRDRSALEDRAMAFLTEVKVTFEDKMEKFNEFLKLLADYQAKRIDVRVVKEGMMELFKDHKNLLSGFNTFLPEGHKISLSLDGDRTTR* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3937 177 PANTHER PROTEIN, PUTATIVE-RELATED 90 173 - -
Mtr1g3937 177 PANTHER PROTEIN, PUTATIVE-RELATED 4 136 - -
Mtr1g3937 177 SUPERFAMILY PAH2 domain 97 162 IPR036600 GO:0006355
Mtr1g3937 177 Gene3D Paired amphipathic helix 13 75 IPR036600 GO:0006355
Mtr1g3937 177 Gene3D Paired amphipathic helix 99 161 IPR036600 GO:0006355
Mtr1g3937 177 SUPERFAMILY PAH2 domain 7 76 IPR036600 GO:0006355
Mtr1g3937 177 PANTHER SIN3B-RELATED 90 173 IPR039774 GO:0003714
Mtr1g3937 177 PANTHER SIN3B-RELATED 4 136 IPR039774 GO:0003714
Mtr1g3937 177 Pfam Paired amphipathic helix repeat 116 160 IPR003822 GO:0006355
Mtr1g3937 177 Pfam Paired amphipathic helix repeat 30 74 IPR003822 GO:0006355
Mtr1g3937 177 ProSiteProfiles PAH domain profile. 5 77 IPR003822 GO:0006355
Mtr1g3937 177 ProSiteProfiles PAH domain profile. 92 163 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3937 Mtr-Chr1 50982477 50983010 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3937 13 88 WRKY Transcription Factor Family AT4G12020 32.895 8.38e-06 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr1g3937 PAH 6.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3937 K11644 - mtr:MTR_1g104960 342.428