Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3936 ATGAGAAGATCCAGAGTAAATGCCAATATTGGTGAAGCTGAAGCACTTGCATTTATAATGAAAGTGAAATATGAGTTTCAAGATAAGAGGGAAAAGTATGAAGAATTTTTAGAACTTATGAAAGATTTCAAGGCCCAAAGAATTGATACAGAAGCTGTGAAAGAAAGAGTTATGGAGTTATTTAAAGAACATCAATATTTGATTTCAAGATTCAACATCTTCATGCCATCAGGACATGAAATCTCACTTCCATTGGATGATGATCAACAAGAAAGTGATGGATTAGAGTTCAAAGATGAACATAATGATGATGAACTTCAAGGTGATGGAGTGGCACTCAAAGATGAGCAGAAAAATGATGAAGAATAA 369 0.3333 MRRSRVNANIGEAEALAFIMKVKYEFQDKREKYEEFLELMKDFKAQRIDTEAVKERVMELFKEHQYLISRFNIFMPSGHEISLPLDDDQQESDGLEFKDEHNDDELQGDGVALKDEQKNDEE* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3936 122 PANTHER SIN3B-RELATED 13 99 IPR039774 GO:0003714
Mtr1g3936 122 Gene3D Paired amphipathic helix 14 76 IPR036600 GO:0006355
Mtr1g3936 122 MobiDBLite consensus disorder prediction 94 122 - -
Mtr1g3936 122 SUPERFAMILY PAH2 domain 9 77 IPR036600 GO:0006355
Mtr1g3936 122 MobiDBLite consensus disorder prediction 82 122 - -
Mtr1g3936 122 Pfam Paired amphipathic helix repeat 31 74 IPR003822 GO:0006355
Mtr1g3936 122 ProSiteProfiles PAH domain profile. 2 78 IPR003822 GO:0006355
Mtr1g3936 122 PANTHER PROTEIN, PUTATIVE-RELATED 13 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3936 Mtr-Chr1 50977393 50977761 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3936 10 88 WRKY Transcription Factor Family AT4G12020 36.709 3.29e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr1g3936 PAH 4.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3936 K11644 - mtr:MTR_1g104940 246.128