Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3930 ATGGAGTTTCAGAGACGCCAAGGTCACTGCCTCTCCGAGAGGAAGGGGCAAAAACGTAAGTTAGACGAAGAATTACCGGAAGACCGTCAGATCTCGTCGGCACCGCCTACCGCCGACGAACGTGCGGCACTTCTCGTCGAAGTTGCTAATCAGGTCACCGTTCTCGAGTCTACTTTCACGTGGAATGAAGCCGATCGAGCCGCGGCTAAGCGTGCTACTCATGCGCTTGCCGATCTCGCGAAGAATGAGGAAGTGGTGAATGTGATTGTGGAAGGAGGTGCGATTCCGGCTCTGATTAAGCATCTTCAAGCGCCGCCGGTGACTGATTGCGTTCAGAAGCCGTTGCCGTTTGAGCATGAAGTTGAGAAAGGGAGTGCCTTCGCGTTAGGACTTCTCGCCGTCAAGCCGGAACATCAACAACTAATTGTGGACGGTGGTGCCTTAACACATCTTGTTGATCTTTTAAAGAGGCATAATAATGGTTTGACTTCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCGGATGCTGTTACTAATCTCGCACATGAGAATAGCAACATTAAAACCCATGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTGGAATTTGCTGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCACTGCGAACTCTAGCTTTTAAAAATGATGAAAATAAAATTCAGATTGTTGAATGTGATGCTCTTCCGACTCTGATTCTAATGCTGCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTAGTTCACTCATCTCCTAATATAAAGAAAGAGGTTTTATTTGCAGGTGCTTTACAACCAGTTATTGGATTACTTAGCTCACGCTGCCCTGAAAGTCAGAGGGAAGCGGCATTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTCCGACCTTTGATAGAGATGCTTTCGTCTCCTGATGTACAACTTAGAGAAATGTCTGCCTTTGCATTGGGGAGATTGGCCCAGGACACACATAACCAAGCGGGTATTGCACACAATGGTGGTTTAGTGCCACTGCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGAGAATGAGGATAATGTGTCGGATTTCATTAGGGTAGGTGGAGTTCAAAGACTACAAGAAGGAGAGTTTATTGTTCAAGCGACTAAAGATTGTGTTGCCAAGACATTGAAAAGATTAGAGGAGAAGATTCACGGTCGTGTGTTGAACCATCTGTTATATCTTATGCGAGTTTCAGAAAGGGGTTTTCAAAGGCGAATTGCGTTGGTTCTTGCACATCTTTGCCCTGCAGATGATCAAAGAAGAATTTTTATTGAACACCATGGTCTTGAGTTGCTTATCAGTCTTCTCAGCTCATCCAGCTCCAAACAGCAACTTGATGGTGCTGTGGCTTTATGCAAGTTGGCCAATAAAGCCTCAGCCCTATCTCCTGTAGACGCTGCTCCTCCTTCTCCAACACCACAGGTTTACTTAGGAGAGCAGTATGTAAACAATGCTACATTGTCCGATGTTACATTTTTGGTTGAAGGCAAACGTTTTTATGCTCATAGAATTTGTCTACTGGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGGGACATAGAGATCCCAAATATTAGATGGGAAGTTTTTGAGTTGATGATGAGATTTATATATACTGGATCAGTTGATATCACTCCAGATATTGCTCAAGACCTTCTTCGAGCAGCTGATCAATATCTTTTAGATGGACTAAAGAGACTCTGTGAGTACACAATTGCACAGGATATATTACTAGAGAACGTGTCAAGTATGTATGAACTTTCAGAAGCCTTCAATGCATTATCGTTGAGGCATGCATGCATTCTTTTTATCTTGGAGCACTTTGATAAGTTGAGCGCGCGGCCAGGGCACTCTCTTCTGATTCAGCGTATAATACCAGAGATCCGCAATTACTTTGTTAAAGCTCTTACAAATGTCAACTCCCATAGACTGTAA 2115 0.4411 MEFQRRQGHCLSERKGQKRKLDEELPEDRQISSAPPTADERAALLVEVANQVTVLESTFTWNEADRAAAKRATHALADLAKNEEVVNVIVEGGAIPALIKHLQAPPVTDCVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDGGALTHLVDLLKRHNNGLTSRAINSLIRRAADAVTNLAHENSNIKTHVRMEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKIQIVECDALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLFAGALQPVIGLLSSRCPESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLSSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAENEDNVSDFIRVGGVQRLQEGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSERGFQRRIALVLAHLCPADDQRRIFIEHHGLELLISLLSSSSSKQQLDGAVALCKLANKASALSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDITPDIAQDLLRAADQYLLDGLKRLCEYTIAQDILLENVSSMYELSEAFNALSLRHACILFILEHFDKLSARPGHSLLIQRIIPEIRNYFVKALTNVNSHRL* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3930 704 SMART arm_5 185 225 IPR000225 GO:0005515
Mtr1g3930 704 SMART arm_5 467 507 IPR000225 GO:0005515
Mtr1g3930 704 SMART arm_5 269 309 IPR000225 GO:0005515
Mtr1g3930 704 SMART arm_5 82 134 IPR000225 GO:0005515
Mtr1g3930 704 SMART arm_5 227 267 IPR000225 GO:0005515
Mtr1g3930 704 SMART arm_5 352 392 IPR000225 GO:0005515
Mtr1g3930 704 SMART arm_5 135 183 IPR000225 GO:0005515
Mtr1g3930 704 SMART arm_5 311 351 IPR000225 GO:0005515
Mtr1g3930 704 Gene3D - 37 167 IPR011989 -
Mtr1g3930 704 Pfam BTB/POZ domain 532 634 IPR000210 GO:0005515
Mtr1g3930 704 MobiDBLite consensus disorder prediction 1 37 - -
Mtr1g3930 704 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 700 - -
Mtr1g3930 704 Gene3D Potassium Channel Kv1.1; Chain A 530 674 IPR011333 -
Mtr1g3930 704 Gene3D - 168 274 IPR011989 -
Mtr1g3930 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Mtr1g3930 704 SUPERFAMILY ARM repeat 70 409 IPR016024 -
Mtr1g3930 704 SMART BTB_4 539 636 IPR000210 GO:0005515
Mtr1g3930 704 ProSiteProfiles BTB domain profile. 539 606 IPR000210 GO:0005515
Mtr1g3930 704 Pfam Armadillo/beta-catenin-like repeat 189 224 IPR000225 GO:0005515
Mtr1g3930 704 Pfam Armadillo/beta-catenin-like repeat 227 266 IPR000225 GO:0005515
Mtr1g3930 704 Pfam Armadillo/beta-catenin-like repeat 311 350 IPR000225 GO:0005515
Mtr1g3930 704 SUPERFAMILY ARM repeat 364 508 IPR016024 -
Mtr1g3930 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 196 IPR000225 GO:0005515
Mtr1g3930 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 364 IPR000225 GO:0005515
Mtr1g3930 704 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 700 IPR044282 -
Mtr1g3930 704 Gene3D - 275 518 IPR011989 -
Mtr1g3930 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 405 IPR000225 GO:0005515
Mtr1g3930 704 SUPERFAMILY POZ domain 531 633 IPR011333 -
Mtr1g3930 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 231 IPR000225 GO:0005515
Mtr1g3930 704 CDD BTB_POZ_ARIA_plant 526 641 - -
Mtr1g3930 704 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3930 Mtr-Chr1 50936153 50944838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3930 289 509 U-box Gene Family AT2G23140 24.891 9.70e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Mtr1g3930 BTB 1.2e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3930 - - gmx:100784348 1196.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0070 5 689642 698734 Mtr1g3930 1 50936153 50944838 PCT