Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3913 ATGATTTATCTTAAAGAGAGTGGAAAAGATTGGACAGTTATATGGCAGGCTATAACTCAGCCATGCACAGTGAATGCTATTTGTGGTGTGTATGGTTTTTGCAATTCACCTGATAACAGCACAGTTAATTGTAGTTGTTTACCTGGATACACGCCTTTTGATCCAAATTTTCCATCCAAAGGGTGTTATCCTAATGTTGCCTTAGATTTATGTGCTAAAAATGCAAATTCCTCTGCATCAAACATTACAGTGGTGAAAATTCAAAATGCTGATATACCAAACAGCATATTTTTTGATCTACAAAGAATAGACTCATCTGATTTGGACAGTTGCAGTAAGGAAGTGATGAATGATTGTTTCTGCATGGCTGCTGTTTTGATTGACTCAGTTTGTTATAAGAAAAGGACACCTCTTTTAAATGCAAGAATAAGTATACCTGAAACTAGCAATAGAGTGACACTGATTAAAGTTCCTCAAATTCTTCAAGAGGATCAAAATGATTCACCTTCTCGAGTCGTTTTGATCGTAGCCGCATCAACATGTTCTATGCTTGCTATTGTGTTTGCAACTATTGCTATCTATTATCATCCCACATTTGGCTATCTTATCAAGAAAGAGACGCCGCCGAAGCCAAAGCCTGTGGACATCAACTTAAAGGCATTTTCATTCCAAGAATTGAGAGAAGCGACAAACGGATTCAGAAACGAACTCGATCGTGGAGGTTTTGGTACAGTCTATTTTGGCATGACACATCACAAGAATCTTGTGAGGTTGTTAGGTTTCTGCAACGAGCAGAATCATCGTCTTCTGGTTTATGAAATGATGAGAAATGGAACATTATCAAGTTTCATTTTTAGGGAGGAGGATAAAGATAAACCAAGTTGGGAACATAGAGCTAAAATTGTTGTTGAAATTGCTAGAGGCTTGATGTACCTGCATGAAGAGTGTGACCCTCAGATAATCCACTGCGACATAAAGCCGCAAAATGTTCTTCTTGACTCAAATTATACGGCAAAAATTTCAGATTTTGGAATGGCAAAGCTATTAATGAATGACAGAAGTAGAACAAGCACAAATGTTAGAGGGACAATGGGATATTTGGCACCAGAATGGCTCAAAAATGCGCCTATCACTGCAAAAGTGGATATCTACAGCCTTGGTGTCATGTTGCTTGAAATCTTATTTTGCAAAAGGCACATTGAGTTGAATCAAATTGAAGATGGAACAGAGGGTGGTGATGACATGATACTTATAGATTGGGTTCAATATTGGGCAAAAGAAGGGAAACTAAGAGACATTGTTAGTAATGATGTTGAAGTTGTTAATGATTTCAATAGGTTTGAGAGAATGACTATGGTTGGACTGTGGTGCTTGTGTCCTAATCCAACTATTAGGCCATCTATTGCAAAGGTGTTGCAGATGTTGGAAGGAGATTCTGAAGTTAGTGTTCCACCATTGTTTGATGGGTAA 1470 0.3789 MIYLKESGKDWTVIWQAITQPCTVNAICGVYGFCNSPDNSTVNCSCLPGYTPFDPNFPSKGCYPNVALDLCAKNANSSASNITVVKIQNADIPNSIFFDLQRIDSSDLDSCSKEVMNDCFCMAAVLIDSVCYKKRTPLLNARISIPETSNRVTLIKVPQILQEDQNDSPSRVVLIVAASTCSMLAIVFATIAIYYHPTFGYLIKKETPPKPKPVDINLKAFSFQELREATNGFRNELDRGGFGTVYFGMTHHKNLVRLLGFCNEQNHRLLVYEMMRNGTLSSFIFREEDKDKPSWEHRAKIVVEIARGLMYLHEECDPQIIHCDIKPQNVLLDSNYTAKISDFGMAKLLMNDRSRTSTNVRGTMGYLAPEWLKNAPITAKVDIYSLGVMLLEILFCKRHIELNQIEDGTEGGDDMILIDWVQYWAKEGKLRDIVSNDVEVVNDFNRFERMTMVGLWCLCPNPTIRPSIAKVLQMLEGDSEVSVPPLFDG* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3913 489 PANTHER SERINE/THREONINE-PROTEIN KINASE 248 487 - -
Mtr1g3913 489 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 249 - -
Mtr1g3913 489 Gene3D Phosphorylase Kinase; domain 1 205 248 - -
Mtr1g3913 489 Pfam Protein kinase domain 249 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3913 489 ProSiteProfiles Protein kinase domain profile. 188 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3913 489 Pfam S-locus glycoprotein domain 5 52 IPR000858 GO:0048544
Mtr1g3913 489 SUPERFAMILY Protein kinase-like (PK-like) 215 480 IPR011009 -
Mtr1g3913 489 Gene3D Transferase(Phosphotransferase) domain 1 276 483 - -
Mtr1g3913 489 SMART serkin_6 231 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3913 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 320 332 IPR008271 GO:0004672|GO:0006468
Mtr1g3913 489 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 249 - -
Mtr1g3913 489 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 248 487 - -
Mtr1g3913 489 Gene3D Phosphorylase Kinase; domain 1 249 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3913 Mtr-Chr1 50761566 50763891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3913 217 479 Receptor kinase-like Gene Family AT1G60800 36.667 3.91e-62 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Mtr1g3913 Pkinase 2.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3913 - - aprc:113871840 813.913