Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3907 ATGAATGTTGCTGCAAGTGTTGAGGCAGAGGACTCTGAGTTTATAGAAGTTGATCCTACTGGAAGATATGGAAGATACAATGAAATTCTTGGCAAAGGAGCTTGCAAGACAGTATTTAGAGCATTTGATGAGTATGAAGGAATAGAAGTAGCATGGAATCAAGTAAAGCTTTATGATTTTTTGCAAAATTCTGAAGACCTTGAGAGGTTATACTGTGAAATTCATCTTCTTGAGACATTGAAGCACAAGAATATCATGAAGTTCTACACTTCATGGGTTGATAGTACCAACAGAAACATTAACTTTGTCACTGAGATGTTCACATCTGGGACTCTTAGACAGTATAGACTTAAACATAAAAGAGTTAACATCAGAGCAGTTAAGCATTGGTGCAGGCAGATTTTGGAAGGTCTTGTCTATCTCCACAGCCATGACCCTCCTGTGATCCATAGAGATCTCAAGTGTGATAATATTTTCGTCAATGGTAACCAAGGAGAAGTCAAAATTGGCGATCTCGGCCTTGCTGCAATTCTCCGCAAATCGACTGTTCACTGTGTTGGAACACCTGAGTTTATGGCACCAGAAGTGTATGAAGAGGATTACAATGAATTGGTTGACATATACTCTTTTGGAATGTGCATTTTGGAGATGGTCACCTTTGAATATCCTTATAGTGAATGCAACCATCCTGCTCAAATTTACAAAAAAGTTGTCTCTGGAAAGATGCCAGAATCTCTTTACAAAGTCAATGATCCAGAGGTCAAGCAGTTTGTAGAGAAATGCTTAGCAACTGTATCCCTTAGACTTTCAGCTAAGGAACTCTTAAAGGACCCTTTTCTCCAAATTGATGATTATGAATATAACTTCAAAGAATTGCAGTATCAAAGAGATTGCTATGAAGTAACACCAACAATTAGACAGCAACCTATGAATGGAAATTATAGCATTAGAAATGCTTTAATGAATGTGTACACTGATAATCTTGGTGGTTACGAAGATGATTTTGAAACAAGTGAAATTGATCTCTTTGATTGTGAAGAGGATGATAATTTGGATGAAGTTGACACGTCAATCAAAGGTAGGAGAAGAGATGATGGCATCTTTCTGAGAATCAGAATACCAGATAAGGAAGGCCGAGTTCGAAACATCTACTTCCCGTTCGACACAGAGACTGATACCGCATTGAGTGTTGCATCTGAAATGGTAGCTGAGCTTGACATAACTGACCAAGATGTAACAAAATTAGCAAATATGATAGATAATGAAATTGCAACTTTGGTACCAGGATGGAAAAGGGGACCAATAATAGACGAAATTCCGGAAGATTCAAGTGCAAGTTTCTGCCTTAATTGTGCTGCAAATAATACCTTGGTTGATTATGTATCGTCAAATAATCCATGTGCCAAGAATCTTCAATTCTTTCATTGTTCTAAAAATGGATGTGCCGCGATTCACGGCCGATTCGAGGAGATCACATACCAATATGAAGGGTCTGCCAACACTGCTACAGAAGGTGCACCACCAAGTCAATCCAATGGCATTCATTATGCAGATATTTGTGCTCAGCGAGACGAACATGAATCACGTCATGAAGGATTGAAAGATATACACTGCGATGAATCTCATGACATATCAAAAATATCAACCATAAAGGAGGAGGAAGAGGAGAGAAGTGTTAATGTGGATGACCAAATTGATGTTAATACCAAAAAGCCTCCTTCTAGCCCTGCAGCATCAGAAAATTTATTACTCTTGGGCTATGAAAATGATATAAGGCAAGAATTGAGATGGCTCAAAGTAAGGTACCAAATGCAGTTAAGAGAGCTTAGAGACCATCAATTAGAGCATGGAAAAGATGGATTTATGAGGCCACCAGCTAAGGTATCACACATGAAGATACAACACAATAACACATTATTAAGGTCTATGGCTTATAAGAAGCATTATTCAGTTGATGCTGAGAAATGCAACACTTTGGCTGACCAAATGATTCCGAATTATGTTTATGAAATGAGTCAGCCTAACAATTCTGAGCAAATGGTCACAGCCAAGGATTTCTTTGCAAGAGCTTTGCTTCCAAACTCGCTTCAAAGGGCGACCTCGCTTCCGGTTGATGCAATTGATCTCTAG 2130 0.3859 MNVAASVEAEDSEFIEVDPTGRYGRYNEILGKGACKTVFRAFDEYEGIEVAWNQVKLYDFLQNSEDLERLYCEIHLLETLKHKNIMKFYTSWVDSTNRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILEGLVYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSTVHCVGTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVVSGKMPESLYKVNDPEVKQFVEKCLATVSLRLSAKELLKDPFLQIDDYEYNFKELQYQRDCYEVTPTIRQQPMNGNYSIRNALMNVYTDNLGGYEDDFETSEIDLFDCEEDDNLDEVDTSIKGRRRDDGIFLRIRIPDKEGRVRNIYFPFDTETDTALSVASEMVAELDITDQDVTKLANMIDNEIATLVPGWKRGPIIDEIPEDSSASFCLNCAANNTLVDYVSSNNPCAKNLQFFHCSKNGCAAIHGRFEEITYQYEGSANTATEGAPPSQSNGIHYADICAQRDEHESRHEGLKDIHCDESHDISKISTIKEEEEERSVNVDDQIDVNTKKPPSSPAASENLLLLGYENDIRQELRWLKVRYQMQLRELRDHQLEHGKDGFMRPPAKVSHMKIQHNNTLLRSMAYKKHYSVDAEKCNTLADQMIPNYVYEMSQPNNSEQMVTAKDFFARALLPNSLQRATSLPVDAIDL* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3907 709 Gene3D - 350 432 - -
Mtr1g3907 709 Gene3D Transferase(Phosphotransferase) domain 1 107 285 - -
Mtr1g3907 709 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 369 423 IPR024678 GO:0004674|GO:0005524
Mtr1g3907 709 SUPERFAMILY Protein kinase-like (PK-like) 19 285 IPR011009 -
Mtr1g3907 709 Pfam Protein kinase domain 27 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3907 709 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1-RELATED 1 698 - -
Mtr1g3907 709 CDD STKc_WNK 22 280 - -
Mtr1g3907 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Mtr1g3907 709 ProSiteProfiles Protein kinase domain profile. 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3907 709 Gene3D Phosphorylase Kinase; domain 1 7 105 - -
Mtr1g3907 709 SMART serkin_6 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3907 709 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3907 Mtr-Chr1 50674925 50678566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3907 1 491 MAP Kinase Kinase Kinase AT3G22420 57.627 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Mtr1g3907 Pkinase 7.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3907 K08867 - gmx:100804179 1071.23