Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3905 ATGGAACCGGGAACGAGAATTGGTAGTCCTTCTGGAGTTGTGGTGAAGAATAGAAGCTCCTCTGGGTGTTTGATTGTTAGGAAGAAAGGAGATGGTTTGGGTGGCGGTGTTGGTGGTGGTGGTTCAAGTTCGCGGAAGCAGTTTGATTCGAAGAAAGTAAGGAAAAAGGTGAAGGTGGAGGTTGATTCGAGTGATTCAGAATCGAGTGGGGAGTTAGTGATGCCGTCTGGTAGGAGGCTTGGGCCGGAGACAATCCGAGTTTGTAATAGTTTGAGTGCTCTTGAGCGAGGTGGTGGTGGTAATGTTGGTGGCGGGGAGATTAGTAGGAAGAGGGAGAGGATGGAGCAGATTCGGCGCAATGGGGATGGTATGGTTGAGGGGAATGGGTTGGAGAGGAGGGAGAAGAAAGTTAAATTGGATGTATTTGATTTTGATGAGTATGATGGAGTGGGTAAGGAAAGGATGAGGAGGCAGTTTGATAATGACAGGGTTGGTTTAGGAGGGGGAAGGTTTATGGGAACAATGCACGCTGCTAGAGGTAGTGTTGATAGGGAAATTGAAACTGGTTCAAGCAGACACATTGTGGATAAGAGGAAAAAAGCGTATTACAACAGGGCAATTGGCTTGCATCCCGGAGATGGCGGTGAACATAGTAGGATAAAGATGAAAAGGGATGGAACTCAACCTCCTCTGCCCTTGTTGAAGGAGAAGTTTAAACCTGACGAGTCCATTAGGGTTCAGGGAAAAAATGGTGTTTTGAAGGTGATGGTTAACAAGAAGAAGGTGGGTGGGTCAGTAGAACGCTATGAACAACGTAAACCAGTAGAAAGCAAACAAAGTTTAAGGGCTGAAGGCACTTCTAAGAGGAGTGTTCCGATCCATCCTTCATCACACTTAGAAACAAAATCTGCTGAGAAACAGGGTTTACTTGTTAGGCCAGAGAAGAAACAGATAACAACAAGAAAATCCTTGTCAAGTAAGGAGGACAGCAAGGGAATGGAGCAGGATTCAGATGACAATGACACATCAATGAATCTGGAAGTAAAAAATATTAAAGCTCACACACCATCAAAAAAGATAACCTCTGAAAATGAACAGACTCCTGTACATGACAAGCTCCCGACTACAAAGTCAAGTGAAGGGAAAATCAGGCGAGGTAGTGGCACAGAAAAGCAGAAACTACGAGAACAAATACGGGAGATGCTTCTGAATAAAGGCTGGACCATAGACTATCGCCCACGGAGGAATAGAGACTATTTAGATGCAGTTTACATTAATCCTGGGGGAACAGCTTATTGGTCCATCATCAAGGCCTATGATGCACTTCAAAAGCAATTGATTGAGGATGAGCGAGCGGCCAAAGGGGAGAGTTCTTCTTTTGCTCCTATTGCTGATGATGTGCTCAGTCAATTAACAAGGAAAACTCGGAAGAAGATGGAGAAAGATTTGAAGATGAAGAAGAAGAAGCAAAGGATTGATGACATTGATAGCGGAAAAGAACGGCAGATTAAAAGAACTTCTGGCAAAAAGCATCACATGAATAGCATTGATAGTGATAGCAATGAAGACAAGTTAAGCTCCTTTATCAAGCAACAAGGAAGTAAATCGATGAAAGCTAAATTGACTGAAAATGCTGTTACCGGTGGTAGCTCTAAAAGCCAGAATGCTACAACTGAGAAACCATTCTCTGAAAATGACCCTCAGAACCCACATGGAAGGAAAAGTAGAAAACATGGAAGGTGCACTTTATTAGTTCGTAACAAGGGATTGAATTCAGAATCCGATGACTTTGTTCCATATACGGGCAAACGAACAGTGCTTTCCTGGTTGGTTGACTCAGGGGTAGTACAGGTAAGTCAGAAGGTTCAGTACCGCAGGAGGAAGAAAGTAATGCTGGAGGGATGGATCACCAGAGAAGGCATTCACTGTGGCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTCGAGCTTCATGCAGGAAGCAAATTGCCTCAGCCATATCAGAACATATATTTAGATTCTGGAGTTTCTCTTCTACAGTGCCAGATAGATGCGTGGGAAAAACAAGAGAATTCTGGGAAAATCAGTTTCCATTCAGTAGATGTTGATGGTAACGATCCAAATGATGATACCTGTGGTATATGTGGAGATGGAGGAGATTTGATCTGCTGTGATGGTTGTCCATCAACATTTCATCAGAGTTGCTTGGATATACAGATGCTCCCTCCTGGGGAATGGCGTTGTCCAAATTGCACCTGTAAATTTTGTGGACTAGCCAGTGCAACTACTGACAAAGAAGATGATGCAACTGTAAATGCTCTACGTACTTGTGACTTGTGCGAGAAAAAATATCATGACCGCTGCACTAAGGACATGGGTGCCCTTCTTGCCAACTCCAATATGTCAGAGCATTCCTTTTGTGGAAAAAGCTGCAAAGAGCTCTTTGAGAACTTGAAGAAGTACCTTGGTACCAAGCATGAACTTGATGCAGGCTTTACATGGTGTCTTGTTCGTAGAACAAACGATGATTCGGAAGCAGCTAGTAGGGGAGTCACCCAGAGGGTGGAGTGCAACTCCAAGCTGGCTGTTGCACTGACCGTGATGGACGAATGCTTTTTACCTGTTGTTGATAGGAGGAGTGGGATCAATTTAATCCATAATAGTTTATATAATAGCGGGTCAAACTTCAGTCGGTTGAATTATACTGGCTTTTATACCGCTATTTTGGAGCGGGGTGATGAAATAATTTCTGCAGCATCTATCAGGTTCCATGGGACTAATTTAGCAGAGATGCCATTCATTGGAACTCGCCACATATATAGGAATCAGGGAATGTGCCGCCGGCTTTTTTCTGCCATTGAACTCGCTCTTTGCTCATTGAAGGTTGAGAAGCTGGTAATTCCTGCAATTTCTGAACTTGTTCATACATGGACAACAGTTTTTGGTTTCACACATCTTGAGGAACCACTTAGGCAAGAAATGAGGTCATTGAATATGTTGGTGTTCCCTGGCATTGATATGTTACAGAAGCTTCTAGCAGAGCAAGGAAAACATGAGGATGCTGAGCAATTTGAGAATGGAGACGTGGGTTCTATTAAGCCTGCTGTGGTCAATGGATTAGATATCAATTCACCCGCTTTGCAAGATCCTCATGGAAGTGAGGATGCTAGTTCCAATCTCGCCAATAAGATTAACAATGAATGTAGTGATGCTTCTCAAGATATAAGCAATCAAGGTTTAACTGGCAGAACTGTGTGCTCCAAATCTCATTCTGAGGAAAGAATATCTAATTTTGTTTCAGAAAACTGTGCTTCTCCTTCTAATTCTAGTCATGGGGTACTCAAAAAGAAAATTAAAATATCGATGTCTTCTCCCATCAATGATCCATCACCCAAATGTCAACTCATTTCGCCAAATGATACTTCTACAAATGGTCTTCCATCGGATCACTCAGATAGTCATGAAATCCGAGCTTTGGGTCAAGCAACTGCATGTTCTGACCTAGCTACTACTGTAAAGAACATGGTTGAACCTGCTTCTGAGGGGAAACCCCATGCTTTCACTGATTTGAATTGTGATTCACCAGGTCTTAACCAAAATCCTGTGTCGGATTCTCAAGTAGTGGATAATGCTTTGTCTTTTAAAGAGTTTGATATGAATGATGCCCATGTTGAGGTTCTCGAAGCTGGTCCTTTAGTGAATTCATCTCAGGCGAACAATACCGAAGAGAATAATGAAAATGTAGATGTCTCTGGTTCTGTTCTGAATCATGCTATCACTGATATGAATTGTGATTCACCAGGGCTAGACCAAAATCCTGTGTCGGATTCCCGAGTGGCGGATAATGATATGTCTTTAAAAAAGTTTGATATGAATGATGCCCATGTTGAGGTTGTTGAAGCTGGTCCTTTAGTGAATTCGTTCAAAGGGAACAATGCCAAAGAGAATGATGAAAATGTAGATGTATCTGGTTCTGTTCTTAATCATGCTATCACTGATATGAATTGTGATTCACCAGGGCTTGACCAAAATCCTGTGTCGGACTCTCAAGTGGTGGATAATGATTTGTCTTTAAAAAAGTTTGATATGAATGATTCCCTTGGTTTGGTTCTTGAAGCTGGTCCTTTAGGGAATTCATCTCAGGCGAACAATACCAAAGAGAATAATGAAAATGTAGATGTCTCTGGTTCAGCTCTTAATCAAGATATCACTGATATGAATTGTGATTCCCCAGGACTTGACCAAAATCCTGTGTCGGATTCTCGAGTGGTGGATAATGCTTTGTCTTGTAAAGAATTTGATATGAATGATACCCATGTCGAGGTTCTTGAATCTGGTCCTTTAGCGAATTTGTCCGAGGCGAACAATGCCAAAGAGAATGATGAAAATGTAGATGTCTCTGGTTCAGTTCTTGATCACACTGAAAGTGATATGAATAATAATTCACCAGGGCATGACCGAAATCCTGTGCTTGATTCTCAAGTGACGGATAATGCTTTGCCTTTTAAAGAGTTTGATATGAATGATGTCCGTGATGAGGTTGTTGAAGCCAGTCCTTCAGTGAATTCATCTGAGGGGAACAATACCAAAGAGAATAATAAAAATGTAGATGTCTCTGGTTCAGCTCTTAATCATGCTTCCATTGATATGAACAGTAATTCACCAGGTCTTGACCAAAATCCTGTGGTGGATTCTCAACTGGCGGAAAGTGCGTCTTGTAAAGAGTTTGATATGAATGATACCCATGTCGAGGTTCTTGAAGCTGGTCCTTTAGTGAATTTTCCTGAGGGGAACAATGCCAAAGAGAATGATGAAAATGTAGATGTCTCTAGTTCTGTTCTTAATCATGCTGGTGAGAGTTCCTTGCAGGTAAGATCTGATTTGAATGGTGAACTTGCATATGAAAGGGAAAAGAATTCACATTTGGACACAGAAGTTGCTTCAAATGAAATGCATTTTGATGAAACTGGCGTAAATCCTTCTGGTGATAGTGCTGAGACTGACCAAGCATTGAATGGTTGA 5022 0.4198 MEPGTRIGSPSGVVVKNRSSSGCLIVRKKGDGLGGGVGGGGSSSRKQFDSKKVRKKVKVEVDSSDSESSGELVMPSGRRLGPETIRVCNSLSALERGGGGNVGGGEISRKRERMEQIRRNGDGMVEGNGLERREKKVKLDVFDFDEYDGVGKERMRRQFDNDRVGLGGGRFMGTMHAARGSVDREIETGSSRHIVDKRKKAYYNRAIGLHPGDGGEHSRIKMKRDGTQPPLPLLKEKFKPDESIRVQGKNGVLKVMVNKKKVGGSVERYEQRKPVESKQSLRAEGTSKRSVPIHPSSHLETKSAEKQGLLVRPEKKQITTRKSLSSKEDSKGMEQDSDDNDTSMNLEVKNIKAHTPSKKITSENEQTPVHDKLPTTKSSEGKIRRGSGTEKQKLREQIREMLLNKGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYDALQKQLIEDERAAKGESSSFAPIADDVLSQLTRKTRKKMEKDLKMKKKKQRIDDIDSGKERQIKRTSGKKHHMNSIDSDSNEDKLSSFIKQQGSKSMKAKLTENAVTGGSSKSQNATTEKPFSENDPQNPHGRKSRKHGRCTLLVRNKGLNSESDDFVPYTGKRTVLSWLVDSGVVQVSQKVQYRRRKKVMLEGWITREGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLDSGVSLLQCQIDAWEKQENSGKISFHSVDVDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWRCPNCTCKFCGLASATTDKEDDATVNALRTCDLCEKKYHDRCTKDMGALLANSNMSEHSFCGKSCKELFENLKKYLGTKHELDAGFTWCLVRRTNDDSEAASRGVTQRVECNSKLAVALTVMDECFLPVVDRRSGINLIHNSLYNSGSNFSRLNYTGFYTAILERGDEIISAASIRFHGTNLAEMPFIGTRHIYRNQGMCRRLFSAIELALCSLKVEKLVIPAISELVHTWTTVFGFTHLEEPLRQEMRSLNMLVFPGIDMLQKLLAEQGKHEDAEQFENGDVGSIKPAVVNGLDINSPALQDPHGSEDASSNLANKINNECSDASQDISNQGLTGRTVCSKSHSEERISNFVSENCASPSNSSHGVLKKKIKISMSSPINDPSPKCQLISPNDTSTNGLPSDHSDSHEIRALGQATACSDLATTVKNMVEPASEGKPHAFTDLNCDSPGLNQNPVSDSQVVDNALSFKEFDMNDAHVEVLEAGPLVNSSQANNTEENNENVDVSGSVLNHAITDMNCDSPGLDQNPVSDSRVADNDMSLKKFDMNDAHVEVVEAGPLVNSFKGNNAKENDENVDVSGSVLNHAITDMNCDSPGLDQNPVSDSQVVDNDLSLKKFDMNDSLGLVLEAGPLGNSSQANNTKENNENVDVSGSALNQDITDMNCDSPGLDQNPVSDSRVVDNALSCKEFDMNDTHVEVLESGPLANLSEANNAKENDENVDVSGSVLDHTESDMNNNSPGHDRNPVLDSQVTDNALPFKEFDMNDVRDEVVEASPSVNSSEGNNTKENNKNVDVSGSALNHASIDMNSNSPGLDQNPVVDSQLAESASCKEFDMNDTHVEVLEAGPLVNFPEGNNAKENDENVDVSSSVLNHAGESSLQVRSDLNGELAYEREKNSHLDTEVASNEMHFDETGVNPSGDSAETDQALNG* 1674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3905 1673 SUPERFAMILY FYVE/PHD zinc finger 701 757 IPR011011 -
Mtr1g3905 1673 MobiDBLite consensus disorder prediction 299 345 - -
Mtr1g3905 1673 MobiDBLite consensus disorder prediction 477 579 - -
Mtr1g3905 1673 MobiDBLite consensus disorder prediction 1635 1673 - -
Mtr1g3905 1673 MobiDBLite consensus disorder prediction 1127 1149 - -
Mtr1g3905 1673 SMART PHD_3 711 752 IPR001965 -
Mtr1g3905 1673 SMART PHD_3 753 812 IPR001965 -
Mtr1g3905 1673 MobiDBLite consensus disorder prediction 1259 1279 - -
Mtr1g3905 1673 Pfam Tify domain binding domain 634 684 IPR032308 -
Mtr1g3905 1673 MobiDBLite consensus disorder prediction 360 374 - -
Mtr1g3905 1673 MobiDBLite consensus disorder prediction 486 503 - -
Mtr1g3905 1673 ProSiteProfiles Zinc finger PHD-type profile. 709 754 IPR019787 -
Mtr1g3905 1673 CDD PHD2_CHD_II 712 751 - -
Mtr1g3905 1673 MobiDBLite consensus disorder prediction 269 283 - -
Mtr1g3905 1673 PANTHER PHD FINGER FAMILY PROTEIN 1 1425 - -
Mtr1g3905 1673 MobiDBLite consensus disorder prediction 1127 1151 - -
Mtr1g3905 1673 ProSitePatterns Zinc finger PHD-type signature. 712 751 IPR019786 -
Mtr1g3905 1673 MobiDBLite consensus disorder prediction 269 393 - -
Mtr1g3905 1673 MobiDBLite consensus disorder prediction 1 20 - -
Mtr1g3905 1673 MobiDBLite consensus disorder prediction 520 565 - -
Mtr1g3905 1673 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1425 - -
Mtr1g3905 1673 MobiDBLite consensus disorder prediction 375 393 - -
Mtr1g3905 1673 Pfam PHD-finger 712 754 IPR019787 -
Mtr1g3905 1673 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 700 804 IPR013083 -
Mtr1g3905 1673 MobiDBLite consensus disorder prediction 25 83 - -
Mtr1g3905 1673 MobiDBLite consensus disorder prediction 1635 1650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3905 Mtr-Chr1 50658948 50667938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3905 4 1050 PHD Transcription Factor Family AT4G14920 48.375 0.0 893
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr1g3905 TDBD 3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3905 - - mtr:MTR_1g103830 3236.43