Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3902 ATGGAAAAAAATGGGAAAGTATTAATGAATAAGTATGAGTTTGGCAAAAAATTAGGCCAAGGAAACTTCGCAAAAGTTTACCATGCAAGGGACCTGAGAACTGGTGACAATGTTGCAGTAAAGGTTATTGACAAGGAAAAGGTTCTAAAAGTCGGAATGCGAGTCCAAATTATGCGAGAAATTTCGATTATGAGAAAAGTTAAACACCCTAATGTTTTGCGCCTTTACGAGGTTTTGGCCACCAAAACAAAAATTTATTTAGTCTTAGAGTATGCCAAAGGTGGAGATCTTTCAGAAAAAATAGATAAGGTTCAAATCAATGAGAATCAAGCAAGAAAATATTTTCAACAGTTGATCAGTGCTCTAGATTTTTGCCATAACAAGGGTGTATACCATCGAGATTTGAAGCCTGAAAACTTGCTTCTGGATGAGAATGGTGTCCTCAAAATAGCAGATTTCGGATTGGGTACGTTTGTAGAATCCCATCGCCGTAACATAATGTTGCAAACATTGTGTGGAACTCCAGATTATGTAGCTCCAGAGGTTGTTCTTAGAAAAGGTTATTATGGAGAGAAAGCTGATGTTTGGTCTAGTGGATTAATCTTATTTGCTCTTTTGGCAAGAGGGTTGCCTTTTTATGATTTGAGCGAAAGAAAAATGCATAGGAACATCATACACGGAAAATACAATTATCCGAGTTGGTTTTCAATTGACCTAAAAAGACTGTTAACCAAAATTCTTAATCCGAATCTGAGTGCTAGAATATCTACTACTAAAATAATGGAAAATCCTTGGTTTAGAAAAGGATTGCATTTGAAAACCGTTAAAGTCGAAAGAGATGTTCCAGATGCGGCTGCAGATTTTGAGTCTGATAAATCTATTGAGTTGTATGAAAATGAAAGTGTTGTTGTTGATCCAAATCAAGAATCGGTTCAACCGAAATATCTTAATGCTTTTCACATACTTTCTTTATCTGCAAGACTTGATTTGTCTGTCCTTTTTGAGAGGAATGATGATGAAATTGAAGACATCAAGTTTACCTCCGTGAGCTCGGCCTCCTCTATCATATCAACAATAGAGGATATTGCACACATTTTGAAGATGAAGATAGTAAAGAATAATGGAGAGATGTTGAAGTTAGAGAGACTGCAGGATCTTCCAAAAGGGCCGCTTACCATTTCTGCTGAAATATTCGAGTTTGCTCCATCTTTCTTTTTGGTCGAGTTAAAGAAGTCGTGTGGTGATGCATTGGACTACCATAAGATATTGAATGAACACATAAGACCAGCTCTCAAAGATATTGTTTGGATTTGGCATAGTGAGCAACATCATAACATTAGCAAGATGGTGTCTAGTACATAA 1362 0.3642 MEKNGKVLMNKYEFGKKLGQGNFAKVYHARDLRTGDNVAVKVIDKEKVLKVGMRVQIMREISIMRKVKHPNVLRLYEVLATKTKIYLVLEYAKGGDLSEKIDKVQINENQARKYFQQLISALDFCHNKGVYHRDLKPENLLLDENGVLKIADFGLGTFVESHRRNIMLQTLCGTPDYVAPEVVLRKGYYGEKADVWSSGLILFALLARGLPFYDLSERKMHRNIIHGKYNYPSWFSIDLKRLLTKILNPNLSARISTTKIMENPWFRKGLHLKTVKVERDVPDAAADFESDKSIELYENESVVVDPNQESVQPKYLNAFHILSLSARLDLSVLFERNDDEIEDIKFTSVSSASSIISTIEDIAHILKMKIVKNNGEMLKLERLQDLPKGPLTISAEIFEFAPSFFLVELKKSCGDALDYHKILNEHIRPALKDIVWIWHSEQHHNISKMVSST* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3902 453 PANTHER - 2 443 - -
Mtr1g3902 453 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Mtr1g3902 453 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 443 - -
Mtr1g3902 453 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3902 453 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3902 453 Pfam NAF domain 313 372 IPR004041 GO:0007165
Mtr1g3902 453 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Mtr1g3902 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Mtr1g3902 453 Gene3D Transferase(Phosphotransferase) domain 1 92 283 - -
Mtr1g3902 453 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Mtr1g3902 453 CDD CIPK_C 317 432 - -
Mtr1g3902 453 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165
Mtr1g3902 453 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3902 453 Gene3D Kinase associated domain 1, KA1 310 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3902 Mtr-Chr1 50641362 50642779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3902 1 442 CBL-interacting serine-threonine protein kinases AT5G58380 49.780 9.88e-155 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Mtr1g3902 Pkinase 1.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3902 K07198 - gmx:100816254 555.444