Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3896 ATGGACTTTGTAAGTTGTACTCTTGTTTTTCTGTTAACATGCTTATCCATTCATGCTCTTTATTCACTCCTTACTAGAATAACTAAACCAAACTATAAGCTTCCACCAGGACCTTCCCCTCTTCCAATCATAGGGAACCTCCTTGAATTAGGAGAAAAACCTCACAAGTCATTGGCCAAGCTAGCGAAAATTCATGGCCCTTTAATGAGTCTCAAGTTTGGCCAAATAACCACTATTGTTATCTCCTCAGCAACAATGGCTAAAGAGGTTCTCCTAACCAATGACAAGTTCTTGTCAAAGAGAAACATACCTCAAACTGTGTCAGTTCTCAACCATGAGCAGTATAGTCTTGCTTTCATGCCCATTTCACCACTTTGGAAGGAATTGAGAAAAATATGCAACACTCAATTACTTTCTCACAAGAGTCTTGATGCCAGCCAAGACGTTAGGCGTAAAAAAATTCAACAGCTTCTCAATGATATCCATCAAAGCAGTAAAATTGGTGAAGCTATTGACATTGGAACAATAGTGTTCAAGACTACCATAAATTTACTATCAAACACCATTTTCTCTATGGATTTGATTCACTCAAATGGTGCAGCAGGAGAATTTAAGGATGTGGTGACGAATATAACCAAACTTGCTGGAACACCAAATGTGGCTGATTTTTTTCCTGTATTGAAGTTGCTTGACCCACAAGGCCTAAAAAGAAGACAAACAAAAAATGTTGGGAAATTGTTAGACATCTTTGAAGACTTGGTTAACCAACGTTTGGAAATGAGGGAAGGCACAAGTGTAGACACCAATAAAGACATGTTAGATGCCATGCTTAACATTTCCAAGGAGAATGAGTTTATGGACAAAAATATGATTCAACATCTATCACATGATATATTTGTTGCTGGAACGGATACAACGACATCAACACTAGAATGGGCAATGACAGAGCTTATTCGCAATCCAGAAGCGATGCAAAAAGCCAAGAAAGAGTTGAAGCAAACAATTGGGTGTGGTGTGCCACTTGAAGAGTCAAATATCACTGAGCTCCCATACTTAAATGCAATTATAAAAGAAACACTTCGAAAGCATCCACCAGTTCCATTTTTACTGCCCCGAAAAGCTGAGAGAAATGTTGAGATAAGTGGCTACATTATTCCAAAAGATTCACAAGTACTAGTTAATGTATGGACTATTTGTAGGGATGCTAACTTGTGGGAGAATCCAACATTGTTCTCTCCAGAAAGGTTTTTAGGGTCTGATATTGATGTCAAAGGAAGGAATTTTGAGCTTGTGCCATTCGGTGGTGGTAGGAGAATTTGTCCTGGTTTGCAATTGGCTAATAGGATGTTATTGTTAATGTTGGGTTCATTAGTTAACTCTTTTGATTGGGAGCTTGAAGGTGGCATGAAACCAGAAGATATGGATATGGATGATAAATTTGGACTTACTCTTCAAAAAGCCAAACCCCTTCGAATTCTTCCTCTCCCTCCAATTAATTAA 1500 0.3827 MDFVSCTLVFLLTCLSIHALYSLLTRITKPNYKLPPGPSPLPIIGNLLELGEKPHKSLAKLAKIHGPLMSLKFGQITTIVISSATMAKEVLLTNDKFLSKRNIPQTVSVLNHEQYSLAFMPISPLWKELRKICNTQLLSHKSLDASQDVRRKKIQQLLNDIHQSSKIGEAIDIGTIVFKTTINLLSNTIFSMDLIHSNGAAGEFKDVVTNITKLAGTPNVADFFPVLKLLDPQGLKRRQTKNVGKLLDIFEDLVNQRLEMREGTSVDTNKDMLDAMLNISKENEFMDKNMIQHLSHDIFVAGTDTTTSTLEWAMTELIRNPEAMQKAKKELKQTIGCGVPLEESNITELPYLNAIIKETLRKHPPVPFLLPRKAERNVEISGYIIPKDSQVLVNVWTICRDANLWENPTLFSPERFLGSDIDVKGRNFELVPFGGGRRICPGLQLANRMLLLMLGSLVNSFDWELEGGMKPEDMDMDDKFGLTLQKAKPLRILPLPPIN* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3896 499 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 433 442 IPR017972 GO:0005506|GO:0016705
Mtr1g3896 499 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3896 499 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3896 499 PRINTS P450 superfamily signature 431 440 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3896 499 PRINTS P450 superfamily signature 440 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3896 499 Pfam Cytochrome P450 35 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3896 499 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3896 499 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3896 499 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3896 499 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3896 499 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3896 499 PRINTS E-class P450 group I signature 353 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3896 499 PRINTS E-class P450 group I signature 394 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3896 499 PRINTS E-class P450 group I signature 430 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3896 499 PRINTS E-class P450 group I signature 440 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3896 499 Gene3D Cytochrome P450 25 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3896 499 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 1 496 - -
Mtr1g3896 499 SUPERFAMILY Cytochrome P450 35 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g3896 499 PANTHER CYTOCHROME P450 FAMILY PROTEIN 1 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3896 Mtr-Chr1 50598079 50599704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3896 1 495 Cytochrome P450 AT2G45550 44.950 9.42e-157 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3896 - - gmx:100807367 748.043