Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3879 ATGTTCTCTTTCCCTAATAATTTCCCTTCTTCATCATCTTCTTCTTCTTACCCTAATAGTACCCTTTCTTTTCTCATTGACAATCCTGAAAATAATGATTTTCCAAATAACAATACTACTCTTCTTGATGATTCACTACTTTCTATTCCTTTCACATCAACACATCATGATGTTGTTCCATTCCCTGATACTAATTTTGCAGATTGTAACAACACTGCAATGTTTGAACAAGATAATGGCTACAACTTTGGTGTTACTAGTAGTTTTCCAATTCCAAATTTTGTTGTGACAGAGCAGAAACAACCAGCAACAGTTATAGGAGGAAAGAAAGATAGGCACAGTAAGATTCACACATCACAGGGTTTGAGAGACAGAAGGGTAAGATTGTCAAGTGAAATAGCAAGAAAGTTCTTTGATCTTCAAGATATGTTAGAGTTTGACAAACCAAGTAACACACTTGAGTGGCTTTTCACTAAATCTGACACTGCAATCAAAGAACTAGCTAGAACTAAAAACGCTGCTTGTTACAACAACAACAACAACGACAACAGCCCATTTTTTGATTCAAATAGCAACAAATCATTTTCCGGCGGTGGTGGCGGTGATGGTAGTTGTTCTTCTAAAGGGAGAAAATTGAAATGGACACAGAAAGAAGAAACAAAAAAAGAGTCAAGAGAAAGAGCAAGAGCAAGAGCTAGAGAAAGGACTTGTTACAAGATGTGTAGCAGTGGAAGAATGCAACAAGAAGAAATTAGGTACCCTGGGCCTGGTGCAGATTCAACAAATACTCAACAAATGCTGCAACAATTGATTTCATCTTCAACATCACCTGTTGATAGTACTGAAACTGAGGCTTATGCAAGATGGCGTCAGCTTCTTCAACTTCAGACCTATAGTAACCCTTCTTTTCATAATCATCATAACCTATTGGATAGTGAAATACCTAGAGATCATGGTGGATTTAATGTGATTGAGGAATCCATTATGATTAAAAGGAACATGATGTCTGCTACTTCTTCTCAATATCATCACCAAAACCTAATTCCTACTATCCCTAAGGAATTACCAAGTTTCAACCACAATATTAATGATTACTCCTTATTCCCTTGTTCAACTCCAAATTGGGAGACTAGCTCCAACTTTTGTGGAATAGCCACTATGAATCTATCTACATGCTTCTTGAATCCGTGGTAA 1194 0.3677 MFSFPNNFPSSSSSSSYPNSTLSFLIDNPENNDFPNNNTTLLDDSLLSIPFTSTHHDVVPFPDTNFADCNNTAMFEQDNGYNFGVTSSFPIPNFVVTEQKQPATVIGGKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSDTAIKELARTKNAACYNNNNNDNSPFFDSNSNKSFSGGGGGDGSCSSKGRKLKWTQKEETKKESRERARARARERTCYKMCSSGRMQQEEIRYPGPGADSTNTQQMLQQLISSSTSPVDSTETEAYARWRQLLQLQTYSNPSFHNHHNLLDSEIPRDHGGFNVIEESIMIKRNMMSATSSQYHHQNLIPTIPKELPSFNHNINDYSLFPCSTPNWETSSNFCGIATMNLSTCFLNPW* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3879 397 ProSiteProfiles R domain profile. 222 239 IPR017888 -
Mtr1g3879 397 PANTHER TRANSCRIPTION FACTOR TCP12 34 390 - -
Mtr1g3879 397 MobiDBLite consensus disorder prediction 105 123 - -
Mtr1g3879 397 MobiDBLite consensus disorder prediction 178 230 - -
Mtr1g3879 397 MobiDBLite consensus disorder prediction 104 123 - -
Mtr1g3879 397 ProSiteProfiles TCP domain profile. 109 167 IPR017887 -
Mtr1g3879 397 Pfam TCP family transcription factor 108 242 IPR017887 -
Mtr1g3879 397 MobiDBLite consensus disorder prediction 211 230 - -
Mtr1g3879 397 MobiDBLite consensus disorder prediction 178 201 - -
Mtr1g3879 397 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 34 390 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3879 Mtr-Chr1 50466474 50467703 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3879 109 254 TCP Transcription Factor Family AT1G67260 42.197 1.99e-27 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Mtr1g3879 TCP 3.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3879 - - mtr:MTR_1g103380 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3879 1 50466474 50467703 Mtr6g2107 6 37702118 37708381 PCT