Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3875 ATGGAATCCAATAACCATTTCAATTTCGAAGAGTATGAGGGATTTGATTGGGAAGCAGCTGTAAGAGATATGGACACTGTTGTTGAAATGAGAAGTGACGCAAAATCAATTGGAAACGAAGCGGAAAAGGTTAAGGAAAAAGGAAAGGGAAAACAATCTACTCTTGATAATTTCGTTGGAATTGCGGAAAAGGAAAATCAAACGGTTCATGTTCAACAAAATGATGCTGAAATTGAAGAAGAACCTACTTGCACTCATAACATTGATACCGAAGCTGCCAAAACTTGGATTTACCCAGTTAATGTTCCTCTCCGTGACTATCAATTCCATATTACCCAGACTGCACTATTTCAAAACACATTGGTTGCCTTGCCAACAGGACTTGGCAAAACTCTCATTGCCGCCGTTGTCATGTTTAACTACTTTAGATGGTTTCCTGAGGGAAAAATCGTATTTGCTGCTCCTTCTCGACCACTTGTCATGCAGCAGATAGAAGCATGCCATAACATTGTGGGGATACCTCAGGAATGGACAGTTGATATGACTGGTCAGATAAGTCCTCCCAAAAGAGCTCATCTGTGGAAAAAAAAGCGAGTTTTCTTTGTCACTCCACAAGTTTTGGAGAAAGACATCCATTCTGGTAAATGTATGGTGAAGTACTTGGTATGTTTGGTGATTGACGAAGCGCACAGAGCAATGGGAAATTACTCTTATTGTGAAGCAGTTCGTGAGTTAATGGCTGTACCAGTGCAACTAAGAATATTAGCTTTAACCGCAACACCAGGATCAAAGCAGCAGACTGTCCAGGATGTTATCGATAATTTGCATATCTCCAAGCTTGAACATCGCAGTGAAACTGACCATGACGTTATGTCATATGTCCACGACAGGAAGATAGAGTTGATACAGGTTCCAATGGGCCAAGATGCTGTAGAAATAAACAATAAGTTTTTGGAAGTGATACGCCCTATTGTAGCCAGGCTTACCAGTATTGGGGCCATTCAGAACAGAGATTATCGTACTCTGAGCCCTTGCGTATTACTTGAAATGAGGGAAACATTTCGTCAGGGGCACATGCAAGATCTTTCACATATCAACCATGGAGACGTTGAAGGGTATTTTGGAGTTCTCATTACTCTTTATTACATCCATAAACTGCTTTCAAGTCACGGAATAAGGCCAGCATTTGAGATGCTCGAAAGAAAATTGAAGCAAGGGTTTTTTGCAAAATATATGAGTAAAAATGAAGATATTCTGAAAGCAAGGCAACTAATGCAGCAAAGCTTGTCTCATGGAGCGTCGAGTCCCAAGTTGTCCAAAATGCTAGAAGTATTACTGGAACATTTCAAAACCAATGACCCACAAAACTCCAGGGTGATTATTTTCTCCAACTACAGAGAAAGTGTCAGGGACATAATGGTTGCACTTGGAGGTACTGGGGATCAAGTTAGAGCTACCGAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAAGGTCAGTCTCAGAAAGTTCAACAGGCTGTGCTTAAGAAATTTCGGTCCGGTGCCTACAATGTCATTGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTACGAATGATTCAGCGAATGGGGAGAACTGGAAGAAAGCATGATGGACGAGTTGTAGTTTTGGCTTGTGAAGGGGCCGAGTTGAAAGGCTACTTGAAAAAGAAGGCCAAGGGCAAGACTATAAGTAAACACATGCGAAATGGGGGCATAAATAGCTTTGTCTTTCATCCCAGTCCAAGGATGATTCCCCATGTATTTAAACCAGAAGTTCAATATGTTGAACTGTCTATTGAGAAATTTATTCCTCGTCAAAATAATGTGAAAGAAGACCATCTTCAAATTTCTGCATCGAAAGTCAAACTCACTCTTGCTGAAATTGATTTACTTGAAAAATATTTTCACTCTACTGGTGAAAATAGATGTAGATTGTCGCTTATCGCCTTCCCTCACTTTCAGACATTTCCCTCTAGGGTTCATAAAGTGAAGCATTCCTGTGGAACATTGATGCTTATAGACATGATGCAGCGTTTGCAAGGACTGGCAGCATATCCAGGAGATAGCAAAAACTCCCCCCTTCAGGAAGGACAATGTTTAGAAAATAGTAAGCCACTTGACAGTACCGAGCTTGATGAAGCTAAAAACGACAATGAATTATTCTCTAGGGATACAATGGGAAGGAATGCAGATTCTGTAAATATTCTGGAGCTGGATTCCTGTGACATGGACAAGCATCAAGATGAAACGTGTGATGTTGATGAGATAATTCCCGAGACTCCAGATGGCAAGCAAAATTTTTCTAATGAAGGAGCTAATGCCATTGAAACAGCAAATCCTATTGAGAAGCCGACTTCTTCATTGGCTGTAGATGCATGTGATAACAGCATGCGAGATGAAGAACTTAGCCCTCGGTTAACTAATTTAATTAGAAGTGGTGTTGTTCCAGAGTCTCCCATTGATGAAAGAGGGCAATCAGGAAATAGGTTTCTCATTCGAGGCTGTATTTCACCTGCTCATCTCCAGGAAGAACAGGATGTTGATTCTTTAAATTGTAGGAAAACTAAAAAGGCCACCGTTGATAGTGGCACTGGTAAGAATGTATGTACTTCCCCTGTTAATGAAACCGAAACCCCTTTGCTTGAGCTGAAGAATTGTGCAATTACAAGAGGACGTGTCTTTGTTACTCAACTTGAGGAAGGGCATAAACATATTGTTGACCCAAGCTTCAGTGAAGAATCACATCCAAGTTGTGGTGAAATGTCTGTAAGCATTAAACCTGCTCGTAAATTCAAAAGGTTGAGGAAAATTGAAGATACTGAGAGTAATATGAATCATAAAAACAATAATGTTTTTGATTCATCATCAAACTTTTCAAAACCATCTTCTGCCTCCAATCCCACACGATATAAGCGTGGCCAAGGTATAAGGAAACAAGCTAATGTGAGAGACTTCATTGAGGAGGAAGCCGAGGTATCTTCAGATGCCTCTGTATCTAATGATGAAGATGTCGAGGATGACAATTCTGTTGACAGTTTCATAGATGACCGAATCAACGCTACAGCAGCCAGTCAGCCTGAAGCTAGCAGAATGGACATGATGGCAATTTACAGGCGTTCATTGCTCAGTCAAACACCGATTAGTGGAGGTCTGAAATTTTCCACTACCTTTAGTCCTGACAATGTGACTATGACCGCCAGTATTGGTGAAAGTGGTAATTCATCAGGCAAGACAGTGAGTTGTTTCCAGACAGGACAGACCAATCATTCAGCTATTCGAACGTCAGAATCAGTACGGATGGACCAGATGACCTCAGAAGCAGTGCCTTCAACTAGTTTTCCAACAGAGACAGATATAAGAAGCCGTAAAAGAAGATTGACATATCATCATTCTGTACACTTTCCAAGTAAGAATCTGGAACAAGATTTTGCTCTTCAGTCAAAGAAAGAATCAGTGAATACCAATGCAACTATAGATGGTCTATGCGATGATCAATTTTATAATGATATTGATCTTGATGAGTTGGAGGCGCAAGCAACTTCGATTCTAAAACGGAAATTAGATCCTTCGATTCAAAAGCAAGATACAAACCCTCAATCTCATGAGCCGAACCTGGATGTTATTATGTCTCCATCCTTTGACCTTGGTATATGA 3729 0.4041 MESNNHFNFEEYEGFDWEAAVRDMDTVVEMRSDAKSIGNEAEKVKEKGKGKQSTLDNFVGIAEKENQTVHVQQNDAEIEEEPTCTHNIDTEAAKTWIYPVNVPLRDYQFHITQTALFQNTLVALPTGLGKTLIAAVVMFNYFRWFPEGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTVDMTGQISPPKRAHLWKKKRVFFVTPQVLEKDIHSGKCMVKYLVCLVIDEAHRAMGNYSYCEAVRELMAVPVQLRILALTATPGSKQQTVQDVIDNLHISKLEHRSETDHDVMSYVHDRKIELIQVPMGQDAVEINNKFLEVIRPIVARLTSIGAIQNRDYRTLSPCVLLEMRETFRQGHMQDLSHINHGDVEGYFGVLITLYYIHKLLSSHGIRPAFEMLERKLKQGFFAKYMSKNEDILKARQLMQQSLSHGASSPKLSKMLEVLLEHFKTNDPQNSRVIIFSNYRESVRDIMVALGGTGDQVRATEFIGQSSGKAMKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVVLACEGAELKGYLKKKAKGKTISKHMRNGGINSFVFHPSPRMIPHVFKPEVQYVELSIEKFIPRQNNVKEDHLQISASKVKLTLAEIDLLEKYFHSTGENRCRLSLIAFPHFQTFPSRVHKVKHSCGTLMLIDMMQRLQGLAAYPGDSKNSPLQEGQCLENSKPLDSTELDEAKNDNELFSRDTMGRNADSVNILELDSCDMDKHQDETCDVDEIIPETPDGKQNFSNEGANAIETANPIEKPTSSLAVDACDNSMRDEELSPRLTNLIRSGVVPESPIDERGQSGNRFLIRGCISPAHLQEEQDVDSLNCRKTKKATVDSGTGKNVCTSPVNETETPLLELKNCAITRGRVFVTQLEEGHKHIVDPSFSEESHPSCGEMSVSIKPARKFKRLRKIEDTESNMNHKNNNVFDSSSNFSKPSSASNPTRYKRGQGIRKQANVRDFIEEEAEVSSDASVSNDEDVEDDNSVDSFIDDRINATAASQPEASRMDMMAIYRRSLLSQTPISGGLKFSTTFSPDNVTMTASIGESGNSSGKTVSCFQTGQTNHSAIRTSESVRMDQMTSEAVPSTSFPTETDIRSRKRRLTYHHSVHFPSKNLEQDFALQSKKESVNTNATIDGLCDDQFYNDIDLDELEAQATSILKRKLDPSIQKQDTNPQSHEPNLDVIMSPSFDLGI* 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3875 1242 Pfam Type III restriction enzyme, res subunit 117 261 IPR006935 GO:0003677|GO:0005524|GO:0016787
Mtr1g3875 1242 MobiDBLite consensus disorder prediction 1122 1143 - -
Mtr1g3875 1242 MobiDBLite consensus disorder prediction 969 997 - -
Mtr1g3875 1242 CDD FANCM_ID 311 426 - -
Mtr1g3875 1242 Gene3D - 424 595 IPR027417 -
Mtr1g3875 1242 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 279 IPR014001 -
Mtr1g3875 1242 Pfam Helicase conserved C-terminal domain 444 560 IPR001650 -
Mtr1g3875 1242 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 437 608 IPR001650 -
Mtr1g3875 1242 MobiDBLite consensus disorder prediction 1122 1141 - -
Mtr1g3875 1242 MobiDBLite consensus disorder prediction 1217 1231 - -
Mtr1g3875 1242 MobiDBLite consensus disorder prediction 1213 1232 - -
Mtr1g3875 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 572 IPR027417 -
Mtr1g3875 1242 SMART helicmild6 471 561 IPR001650 -
Mtr1g3875 1242 SMART ultradead3 100 300 IPR014001 -
Mtr1g3875 1242 MobiDBLite consensus disorder prediction 1019 1035 - -
Mtr1g3875 1242 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 723 1207 - -
Mtr1g3875 1242 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 14 741 - -
Mtr1g3875 1242 MobiDBLite consensus disorder prediction 963 1052 - -
Mtr1g3875 1242 Gene3D - 100 294 IPR027417 -
Mtr1g3875 1242 CDD SF2_C_FANCM_Hef 435 569 - -
Mtr1g3875 1242 CDD DEXDc_FANCM 102 283 IPR044749 GO:0005524
Mtr1g3875 1242 PANTHER FANCONI ANEMIA GROUP M PROTEIN 723 1207 IPR039686 GO:0006281|GO:0043138
Mtr1g3875 1242 PANTHER FANCONI ANEMIA GROUP M PROTEIN 14 741 IPR039686 GO:0006281|GO:0043138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3875 Mtr-Chr1 50376079 50389913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3875 392 559 Eukaryotic Initiation Factors Gene Family AT3G13920 27.473 1.24e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3875 K10896 - gmx:100820078 1546.18