Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3873 ATGGCGGCACTAGATCAGAACAACACCATTGTTTCCAACTCACTAGAGGATGATTCTTTCTTTGACTACCTCGATACTCTATCTCCTTTAAACACCAAAAAGTATGTTGGAGTTGGAGCTACTGAGACGTTGAACTCACTTGGTATGGACAATCCTCTTTTCACATCACTCGACGTGACCTTTAACAACGACTCCATATTCCTCACGAGGAATAATCTTTTGTACACATCAAATCCTGAAGTTTCACCTGAAGAAGCTCCTACAGATTCAACTCATGCATGGATTGACACAAGTCAGCTACATGATCCTGAAATCTCAAGTGATGACGCTAAGTACCTTCTTGAATTACTTGGCAAGCAAGAACCAGATGGTACGGATGTACAAGATGAGTCTATCACAGATGCAGTTGAAGGTGGAACATATAATCGGGACGGACCAGATTGTGATTACAATAATTTAATTAGTACAACACAATCTGTGACTCTGTTACCACAATGTACTAGTAATAGTAATTATAAAATGAAAACTGTTGATCCACTTGTTTTTGGTTCAAAATATGAAATTGAAGACAATCCTTCGGAACCAATAGCCGTCGCAACAGACAGAAATCAAGCACAGGACAATCTTGCCAATGTTGCTTTAATGGATAGAAATCAAATTAAGAGAGGGGATGGCGAGCTTGCACGTATTAGACGCTGTATACAAAGGAGCTGTCAAGGCTATGAGTCTGAGATGACCAGTATGCAAAGGAACAACTCTGATGAGAGGAATGCTATTAACAAAAACCCTAGTGATTCACAGAAGTGTGTTTTACAAGGAAATGGTTTTTACTTGAATGCACTTCCAGCCTTAAATCATTACGAAGGCATAGAAAATGAAAAGATGCCTTCTCAAAGGAAACCTGAATCACCGAGCTGCACTTATTCTTTGAATATTTCTGTAAGGCAAGGGCATCAACTATCTCAAGTCCCTGCACCAATGGAGACACATCTGCGGCTATCTGAGAATGAAGATGTCACCAAGTCATCAGTTCACATTCCTGGTGAAGATTTCTGTCAGAGTACTCCCAAAAGGACGAGTGAAGTGCAATTTAAGGACATAAAGAACAAAAAGTTAGATCAAAACATGAAAAGGACGATGAAAGTGCATAGGAAAGACCCAATTGATCTAGTTTCTTCTGGTTCAGAACATGTAAAGGAAGAGGAAAGAGCTGATTTTTGTCAGAGTATCCGCAAAAGGAAGAGGAAAGTTAATTGTGGCTGCTTTGCTGCTGGAGTCTACTGCATAGGACCTTGCTCATGTCAAGACTGCTTGAATAAAGCTATTAATGAAGATAAAGTTCTGCAAGCCCACAGGATGATTGAGTATCGTAATCCACCTGTGTTTGTTCCTAAAGTTATAACAAATTCTGATTCCTCACCTCAAATTGTGGATGACTCCGACAAAGCTCCCGCTTCAAATCGACGCAGAATACAATGCAAGAGCAGGAAATCAAGCTGCACGAATAAACGTTGTGAATGTTTTAAGGGTGGTGTTGGTTGCTCCCCAAGCTGTAAATGTCAAGGTTGCAAAAATATATATGATAGAAAGGATAGTGAGGCTGAAACAAAATCTGAGCTTGAAGAAACAGAAGCATCACAGATTTCCAGACCATAG 1656 0.3998 MAALDQNNTIVSNSLEDDSFFDYLDTLSPLNTKKYVGVGATETLNSLGMDNPLFTSLDVTFNNDSIFLTRNNLLYTSNPEVSPEEAPTDSTHAWIDTSQLHDPEISSDDAKYLLELLGKQEPDGTDVQDESITDAVEGGTYNRDGPDCDYNNLISTTQSVTLLPQCTSNSNYKMKTVDPLVFGSKYEIEDNPSEPIAVATDRNQAQDNLANVALMDRNQIKRGDGELARIRRCIQRSCQGYESEMTSMQRNNSDERNAINKNPSDSQKCVLQGNGFYLNALPALNHYEGIENEKMPSQRKPESPSCTYSLNISVRQGHQLSQVPAPMETHLRLSENEDVTKSSVHIPGEDFCQSTPKRTSEVQFKDIKNKKLDQNMKRTMKVHRKDPIDLVSSGSEHVKEEERADFCQSIRKRKRKVNCGCFAAGVYCIGPCSCQDCLNKAINEDKVLQAHRMIEYRNPPVFVPKVITNSDSSPQIVDDSDKAPASNRRRIQCKSRKSSCTNKRCECFKGGVGCSPSCKCQGCKNIYDRKDSEAETKSELEETEASQISRP* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3873 551 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 3 258 IPR044522 GO:0003700
Mtr1g3873 551 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 260 545 IPR044522 GO:0003700
Mtr1g3873 551 MobiDBLite consensus disorder prediction 530 551 - -
Mtr1g3873 551 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 260 545 - -
Mtr1g3873 551 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 3 258 - -
Mtr1g3873 551 MobiDBLite consensus disorder prediction 244 265 - -
Mtr1g3873 551 SMART CXC_2 409 443 IPR033467 -
Mtr1g3873 551 SMART CXC_2 488 529 IPR033467 -
Mtr1g3873 551 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 492 525 IPR005172 -
Mtr1g3873 551 MobiDBLite consensus disorder prediction 467 488 - -
Mtr1g3873 551 ProSiteProfiles CRC domain profile. 403 528 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3873 Mtr-Chr1 50364782 50368077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3873 227 546 CPP Transcription Factor Family AT3G22760 32.188 6.13e-41 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Mtr1g3873 TCR 6.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3873 - - mtr:MTR_1g103230 1098.57