Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3869 ATGGCCGTTGGTAAGAACAAGCGGATCTCTAAGGGGAAGAAAGGTGGCAAGAAGAAAGCTGCTGATCCATTTTCCAAGAAGGATTGGTATGATATCAAAGCTCCTTCAGTCTTCCAGGTGAAGAATGTCGGCAAGACCCTCGTCTCTCGTACTCAGGGTACTAAGATTGCTTCAGATGGACTCAAGCATAGAGTGTTTGAGGTTTCATTGGCTGATCTTCAAGGAGACGAAGAACATGCATTCAGGAAGATTAGGTTGAGAGCTGAAGATGTTCAAGGGAAAAATCTTTTGACAAATTTCTGGGGGATGAATTTCACAACTGACAAACTGAGGTCATTGGTGCGTAAGTGGCAAACTCTTATTGAAGCCCATGTGGATGTCAAGACTACTGATAATTACACATTGAGGATGTTTTGCATTGGATTTACCAAGAGGAGAGCTAACCAGGTGAAGAGGACCTGTTATGCACAATCTAGTCAGATTAGACAGATCCGTAGGAAGATGGTTGAGATCATGATCAACCAAGCATCATCCTGTGATTTGAAGGGATTGGTCCACAAATTCATTCCCGAGATGATTGGGAAAGAGATTGAGAAAGCCACTTCTAGCATTTACCCTTTGCAGAATGTGTTCATCCGAAAAGTGAAGATCCTTAAAGCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTTCATGGAGATTACAATGAGGATGTTGGCACAAAGGTAGAGAGGCCTGCTGATGAAATGGTGACAGAGGAACCTACTGAAATTGTTGGAGCTTGA 786 0.4288 MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASDGLKHRVFEVSLADLQGDEEHAFRKIRLRAEDVQGKNLLTNFWGMNFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMVEIMINQASSCDLKGLVHKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDVGTKVERPADEMVTEEPTEIVGA* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3869 261 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 261 - -
Mtr1g3869 261 Hamap 40S ribosomal protein S1 [RPS3A]. 1 258 IPR027500 GO:0003735|GO:0005840|GO:0006412
Mtr1g3869 261 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Mtr1g3869 261 MobiDBLite consensus disorder prediction 1 15 - -
Mtr1g3869 261 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 261 - -
Mtr1g3869 261 MobiDBLite consensus disorder prediction 1 22 - -
Mtr1g3869 261 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Mtr1g3869 261 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3869 Mtr-Chr1 50307432 50310027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3869 1 261 Cytoplasmic Ribosomal Protein Gene Family AT3G04840 85.115 1.37e-163 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3869 K02984 - gmx:100813273 469.929