Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3868 ATGGAATCCTCTTATAGTCCAAAACTCTTAATTTCCTTCATTGTCATTCTCATATCCATCAACCCCTCATCACACCAATCTCTACCACCACTAAATCCAAGACTCACCAAAGCCTACATAGCACTCCAAGCATGGAAACAAACATTCACCTCAGACCCAAAAAACACCACTTTAAACTGGTATGGCCCAAATGTATGCAACTACACAGGTATCCTTTGTGCACCGTCACTAGATGATCCTTACATCAATACCGTTGCTGGTATAGACATAAACCATGCAAACATAGCAGGTTCATTACCAGAAGAACTTGGTCTTTTAACAGACATAGCTCTTTTCCACATAAACTCAAACCGTTTCTATGGTTCACTCCCCAATAGTTTCAACCACCTTCACCTTCTCCATGAGCTAGACATCAGTAACAACCAATTCTCAGGAACATTCCCGGAGGTTGTTCTTTGCATTCCTTCATTAAAATACTTGGACATAAGATACAACAATTTTCAAGGAAATGTTCCTAAAGGCCTCTTTGATCTCAAACTTGATGCACTTTTCATCAACAACAACAAATTCAAATTTTCTTTACCAGAAAATTTCGGAAAGATGCCAGCTTCTGTTGTTGTGTTCGCGAACAATGATATACAAGGTTGTATTCCATCGAGTGTAGCGTATATGAAGGATACAATCAACGAGATAATTATGACGAACAGCGGAATGAAAGGCTGTTTACCTAATGATATAGGAAAATTGGATAAAGTGACAGTGTTTGATGTTAGTTTTAATGAGTTTGTTGGTGAATTGCCTGAAAGTATCAGTGGAATGAAAAGTTTGGAGCAGTTGAATGTGGCACATAATAAATTTTCTGGTGTTATTCCTGAGAGTATATGTAGATTGCCAAGGTTGAAGAATTTAACGTATTCGTATAATTACCTGAGTGGTGAATCAGAGATTTGTGTTAAGTTGGATGATAAGGATGATACAAAGAATTGTATTCCTCATATGCATTTCCAAAGATCGAGTCATGGGTGTGATGCTTTTTATGAACATCCTGTTCATTGTACTGGTGTTGGTTGTTCTTTTGTAACTCTACCGCCACCACCACCTTCTTGTCCACCTCCTCCTCCTCCGGCAGCTTACCACCATTATCTCTGA 1149 0.3864 MESSYSPKLLISFIVILISINPSSHQSLPPLNPRLTKAYIALQAWKQTFTSDPKNTTLNWYGPNVCNYTGILCAPSLDDPYINTVAGIDINHANIAGSLPEELGLLTDIALFHINSNRFYGSLPNSFNHLHLLHELDISNNQFSGTFPEVVLCIPSLKYLDIRYNNFQGNVPKGLFDLKLDALFINNNKFKFSLPENFGKMPASVVVFANNDIQGCIPSSVAYMKDTINEIIMTNSGMKGCLPNDIGKLDKVTVFDVSFNEFVGELPESISGMKSLEQLNVAHNKFSGVIPESICRLPRLKNLTYSYNYLSGESEICVKLDDKDDTKNCIPHMHFQRSSHGCDAFYEHPVHCTGVGCSFVTLPPPPPSCPPPPPPAAYHHYL* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3868 382 SUPERFAMILY L domain-like 39 315 - -
Mtr1g3868 382 Pfam Leucine rich repeat 252 310 IPR001611 GO:0005515
Mtr1g3868 382 Pfam Leucine rich repeat 113 167 IPR001611 GO:0005515
Mtr1g3868 382 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 24 367 - -
Mtr1g3868 382 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 24 367 - -
Mtr1g3868 382 Pfam Leucine rich repeat N-terminal domain 41 73 IPR013210 -
Mtr1g3868 382 Gene3D Ribonuclease Inhibitor 38 331 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3868 Mtr-Chr1 50304534 50306013 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3868 20 357 Leucine-rich Repeat extension Gene Families AT3G22800 63.930 1.36e-156 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3868 - - gmx:100813811 538.88