Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3867 ATGGAATCCTCTTATAGTCTACAATTCTTAATTACCTTCATTGTCATTCTCATATCCATCAACCCCTCATCACACCAATCTCTACCACCACTAAACCCAAGACTCACCAAAGCCTACATAGCACTCCAAGCATGGAAACAAACATTCACCTCAGACCCAAAAAACACCACCTTAAACTGGTATGGCCCAAATGTATGCAACTACACAGGTATCTTTTGTGCACCGTCACTAGATGATCCTTACATCAATACCGTTGCTGGTATAGACATAAACCATGCAAACATAGCAGGTTCATTACCAGAAGAACTTGGTCTTTTAACAGACATAGCTCTTTTCCACATAAACTCAAACCGTTTCTATGGTTCACTCCCCAATAGTTTCAACCACCTTCACCTTCTCCATGAGCTAGACATCAGTAACAACCAATTCTCAGGAACATTCCCGGAGGTTGTTCTTTGCATTCCTTCATTAAAATACTTGGACATAAGATACAACAATTTTCAAGGAAATGTTCCTAAAGGCCTCTTTGATCTCAAACTTGATGCACTTTTCATCAACAACAACAAATTCAAATTTTCTTTACCAGAAAATTTCGGAAAGATGCCAGCTTCTGTTGTTGTGTTCGCGAACAATGATATACAAGGTTGTATTCCATCGAGTGTAGCGAATATGAAAGATACAATCAACGAGATAATTATGACGAACAGCAGAATGAAAGGCTGTTTACCTAATGATATAGGAAAATTGGATAAAGTGACAGTGTTTGATGTTAGTTTTAATGAGTTTGTTGGTGAATTGCCTGAAAGTATCAGTGGAATGAAAAGTTTGGAGCAGTTGAATGTGGCACATAATAAATTTTCTGGTGTTATTCCTGAGAGTATATGTAGATTGCCAAGGTTGGAGAATTTGACGTATTCGTATAATTATTTTAGTGGTGAATCAAAGATTTGTGTGAACTTGGATGATAAGGATGATAGGAAAAATTGTATTCCTCATAGGCCTTTGCAAAGATCGAGTGATGAGTGTGATGCTTTTTATAAACATCCTGTTCATTGTACTGGTGTTGGTTGTTCTTTTGTAACTCCACCGCCACCTCCACCACCACCTCCACCGCCACCTCCTCCACCACCACCACCGCCACCACCACCTCCACCTCCTCCTCCGCCACCACCGCCGCCGCCTCCACCACCACCACCATCACCGCCTCCACCTCCACCTCCACCACCGCCGCCTCCACCTCCACCTCCACCTCCTCCTCCGCCACCACCACCACCTCCACCTCCTCCTCCGCCACCACCACCGCCGCCGCCTCCACCACCACCACCATCACCATCACCGCCTCCACCTCCACCACCTCCTCCGCCACCATCTCCTTGTCCGCCACCACCTTCACCACCTCCTCCTCCGGCAACTTACTACCATTATCTCTGA 1431 0.4479 MESSYSLQFLITFIVILISINPSSHQSLPPLNPRLTKAYIALQAWKQTFTSDPKNTTLNWYGPNVCNYTGIFCAPSLDDPYINTVAGIDINHANIAGSLPEELGLLTDIALFHINSNRFYGSLPNSFNHLHLLHELDISNNQFSGTFPEVVLCIPSLKYLDIRYNNFQGNVPKGLFDLKLDALFINNNKFKFSLPENFGKMPASVVVFANNDIQGCIPSSVANMKDTINEIIMTNSRMKGCLPNDIGKLDKVTVFDVSFNEFVGELPESISGMKSLEQLNVAHNKFSGVIPESICRLPRLENLTYSYNYFSGESKICVNLDDKDDRKNCIPHRPLQRSSDECDAFYKHPVHCTGVGCSFVTPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPSPSPPPPPPPPPPPSPCPPPPSPPPPPATYYHYL* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3867 476 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 22 369 - -
Mtr1g3867 476 MobiDBLite consensus disorder prediction 381 464 - -
Mtr1g3867 476 SUPERFAMILY L domain-like 39 314 - -
Mtr1g3867 476 Gene3D Ribonuclease Inhibitor 38 329 IPR032675 -
Mtr1g3867 476 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 22 369 - -
Mtr1g3867 476 PRINTS Proline rich extensin signature 361 373 - -
Mtr1g3867 476 PRINTS Proline rich extensin signature 375 391 - -
Mtr1g3867 476 PRINTS Proline rich extensin signature 396 408 - -
Mtr1g3867 476 PRINTS Proline rich extensin signature 408 429 - -
Mtr1g3867 476 Pfam Leucine rich repeat 252 309 IPR001611 GO:0005515
Mtr1g3867 476 Pfam Leucine rich repeat 113 167 IPR001611 GO:0005515
Mtr1g3867 476 Pfam Leucine rich repeat N-terminal domain 41 73 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3867 Mtr-Chr1 50301493 50303303 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3867 20 375 Leucine-rich Repeat extension Gene Families AT3G22800 64.903 1.55e-159 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3867 - - gmx:100813811 551.592